Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34430 145 / 9e-41 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G25860 133 / 3e-36 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G13930 69 / 2e-13 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 69 / 4e-13 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G52200 62 / 5e-11 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT4G26910 42 / 0.0002 Dihydrolipoamide succinyltransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034304 [exp] 133 / 6e-36 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10041467 [exp] 109 / 1e-27 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006877 [exp] 67 / 2e-12 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 65 / 7e-12 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 63 / 5e-11 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 62 / 5e-11 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084900 [exp] 145 / 8e-41 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.013G114300 [exp] 144 / 5e-40 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 132 / 7e-36 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 132 / 7e-36 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.003G043900 [exp] 69 / 3e-13 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 68 / 5e-13 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 65 / 7e-12 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0105 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10009433 pacid=23149741 polypeptide=Lus10009433 locus=Lus10009433.g ID=Lus10009433.BGIv1.0 annot-version=v1.0 ATGGCGGCTCGCCTTCTCCAATCCACGTTCCTCCCAAACCCATGTCGCAATTCTTCTTCTTCTTCTTCTAATCCGTCCCCAATGGCGCGAATCGCCCGTC GCCGGAGTAGAAACTCCCAGTTGGTGGTTGAAGCTAAGATCCGAGAGATTTTCATGCCGGCGCTGAGCTCGACGATGACGGAGGGGAAGATCGTTTCCTG GATCAAATCGGAAGGGGAGAAGTTATCTAAAGGTGAGAGTGTTGTTGTTGTTGAGTCTGACAAGGCTGACATGGATGTGGAGACTTTCTACGACGGGTAC CTTGCTGCAATCATGGTGGAGGAAGGTGGTGTCGCCGCCGTCGGCTCTGCCATTGCGCTTTTGGCCGAGTCCGAGGCGGAAATCGACGAGGCCAAGTCCA AAGCCGCCGGAGGGCCTCCTTCCGCTGCTGCTGCTGCTCCTGCTCCGGCGGCGGCTGTAATTGAGAACGTGGCTGCAGTTTCAGCAGCTCCGGTTGTTGT TGCGGCTGCTCCGGCGGCGGCGAAGCTGGGATCCGCCGTGCATCCGGCGTCGGAGGGAGGGAAGAGAGTGGTGGCGTCACCGTACGCGAAGAAGCTGGCG AAGGAGTTGAAGGTTGAGTTGGCGGGGATTGTTGGAAGTGGACCTCTGGGGAGGATTGTGGCTAAGGATGTTGAGGCAGCTGCGGCGGCGCCGGCTGTAT CTGCTCCGCCGGCGCCACCTGTGGCGGCGGAGGCTTAG
AA sequence Show only first row Show all	>Lus10009433 pacid=23149741 polypeptide=Lus10009433 locus=Lus10009433.g ID=Lus10009433.BGIv1.0 annot-version=v1.0 MAARLLQSTFLPNPCRNSSSSSSNPSPMARIARRRSRNSQLVVEAKIREIFMPALSSTMTEGKIVSWIKSEGEKLSKGESVVVVESDKADMDVETFYDGY LAAIMVEEGGVAAVGSAIALLAESEAEIDEAKSKAAGGPPSAAAAAPAPAAAVIENVAAVSAAPVVVAAAPAAAKLGSAVHPASEGGKRVVASPYAKKLA KELKVELAGIVGSGPLGRIVAKDVEAAAAAPAVSAPPAPPVAAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	0	1
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	1.0	0.9046
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	4.9	0.8528
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	9.4	0.8810
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010042 [exp]	10.2	0.8156
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	10.5	0.8287
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	11.2	0.8427
AT3G63430			unknown protein		Lus10018750 [exp]	11.7	0.8593
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	13.6	0.8527
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10002801 [exp]	14.1	0.7804
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	23.3	0.8399

Compare expression of checked genes

Lus10009433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.