Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34355 182 / 6e-46 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) AT5G47790 56 / 1e-07 FHA SMAD/FHA domain-containing protein (.1) AT5G38840 54 / 7e-07 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006070 [exp] 2667 / 0 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10028665 [exp] 152 / 1e-38 AT1G34355 71 / 1e-12 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10003911 [exp] 53 / 2e-06 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 52 / 4e-06 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 52 / 4e-06 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 50 / 1e-05 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114700 [exp] 285 / 3e-79 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.006G003100 [exp] 54 / 4e-07 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 55 / 5e-07 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 53 / 2e-06 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.009G156900 [exp] 44 / 0.0003 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10009434 pacid=23149714 polypeptide=Lus10009434 locus=Lus10009434.g ID=Lus10009434.BGIv1.0 annot-version=v1.0 ATGGTGAGCAGCAGCAAGAGACAATCGGAGAGGAAAATACCTGTGTTCTCGGTCTTCAAGGACCTCTCGATCATCAAGAACATCTTCGTCCTCTCGCCGG AGAAAGAAGACGCAGGCAAATCGGAGAAAGCTCCGGAGATAGAAGAAGGAAGAGCGCCGGGAGCTGAAATGGAGGAGGTTTTGACCGTCGGACGTCATCC GGACTGCACGATCGTGATGTTGCATCCTAGCGTCAGTCGGCGGCATTTCCAGATCAACGTCACGCCGTCCACTCACCAGCTCTTCGTCACCGATCTTGGT TCCGTTCACGGAACTTGGGTTTCGGGGAGGAGAATTGAGCCAGGAGCTCGCGTGGAGGTTGGGGAAGGGGATACGATAGTAGTAGGAGCATCGACGAGAG TGTATAGGTTGAATTGGGTGCCGCTGAGCCGCGCCTACGGAATGCAGAATCCTTCAGCTACTGCTGCTATGGTTGAAGAGCGAGAAGCGATTACTACTAC TCCTCAGAAGAAAGCGCAAGTGAAGGTTAGGGATTCTGATGAAGTGAGGGAAGTTTTGAGTAGGAGACTGGACGGCTGTGGAGTTGCTCAGAAGGTTGCT AGTGAGGAATTTTCTGGTGAAGTCGTCTCAGAGATGGAGGAGGATGGTTGTTCTACGAGGTCGGGGATCAAGATGCCAGTTCTAGATGAAGATAGCGAGG TCAAAATGCCTGAGGTGAAGGAAGATGCAAAGCATCAGTCTATGGACTCTGAGGAAGTTTTAAGCAGTGAGAAGGAGGCTGGGATTTCAGAAACAGTGGA AAAGGAAAGTCCAGTGAGATGGGAGCTGCAATCAGATGTTGGTGTTAGCATAGAATCTTTACTGCCTGCTAAGAAAGAGGACGATGTAGTCGGTGAAACA CCTCAGATCTATCAGTATGTGCCCTTTCCAGTGGGGAAAGAGGAAATCGGGCGGCTGTACAGAAAGAATGATGAACCAGTGAAAGTTTCACAGTTGGGAA TTGGTAGTCCTGCTTTTCCTTTGGTTAAGCAAGATGCATTGCTAGTGATAAAACATGAAGAAGCTCCTGTAAGATCAGAAGGGGAATCAAGTTATTTGAA GCTAACCAATTCAGACCCTGAACCATCAATGATGTATACTCAAGAACATTCAGAAACTGCTGTAGGAGAAGTGGATTCAGAGAGCATCTTGCAGCAAGTG CTTTTTCCAAAGGAAGAGGAAACTAAGGTCCCCTTGAGAAATGATAATGAACTGACAGAAGTTTCGTGCTTGGGAAATGGTGACTCTGAGTACTATTCTT TTAAAGATTCACTAGCAGAAGGAGGGAGCCAAGACGTTTCTGTATTATTCCAAGGCGAGTCCAGTGAAGTGGCCAATCTGTACTCTTCTCTACTTTTTGC GGCTGTGAAAGCCCACCTGGACAGGGAGACATCATTGATGAAAAACCAGGACCATCTAGAAACTGCTCGTTTTGAAGTGAATGTATCTTTGACAGTTGAG AATCTACTTGAAGCAGACCAGCAGCAGGTGTCTTCTGGGGATAAGGACGAAACGAAAAGCCTGTCCAGCAGTGCTGTTATTTCTGAATTGGATTGTGGAA GTTCTTCAATGAAGAATCAGGAAGGTTTAGAGACTGGTCTTTCTGAATTGGTATGTGAAAATTCACCAATGAAGAACCTGGAAGGTTTTGAGACTTGTAT TTCTGAATTGGATTGTGAAAGTTCACCAATGAAAAACCAGGGAGGTTTAGAGATTGGTCTTTCTGAATTCAATTGTGAAACTTCATCAATGAATAACCAG AAAGGCTTAGAGACTGATCTTTCTGAATTGGATGCTGTGGATGGGAATCTGTCTAGGACTGAGTCGCAGCATATTTCTCTTGACAAGGAAGACACAGAAG TCACGGAAGTTCATAATTTGTCTTCTTCGGATGAGAACCTACTTAAGTCTGCCCCACAGCTACTGTCCCTTGAGGAAAAAGAGGAAATAAGCTCTCTGCC CAGTAGTGATAATGTTGTCACAGAAGTAGCATCAGCAGTACAAACAGATTTCAGGGATGACAGATCATCACTGATGACGGACCAGAAACATTTGGAAATT GGTCTTTCTGATGCAAACTCAGGGAACTTGCCTTTGATGATTGAGAATCTATCTGTAGTTGAGTTTGAGGAGACGCCTTTTGTGGGGAAGGAAGACAATG AGAGTCAGTGTGAAGATGGTGATGAAGTTGAGAAATACAATGAACTGACGAGGAGTCCTGAACGTTATTCTATTGAAGATTCAGCTACTGGGGAAGGTAA TAAAAATGGTTCAGCGGATCTAGAGATTAAGAATGCCGAATCCGATGAACTGATGATAAATCATGACTGGGATTCTGCTGAAAATGGACCTCCAAAGAGA AGCAGTACCGAAAGCTCAGAGAGGGACATTAGAATGCAAGATTTAGATTCTCTGCTGGTTGTCGAGGCAACTGAAGCTGATCTGGAAACTAGTACGTCAC TTGATGCAGACTCCTTGAACGACTTGCAGCAAGGGTCATTTTCCAATGAGCGGACAGAAACTTCACAGCTGGGAGCTGGTAGTTTAGATGTTATGAAGGA GAAAGAGCTCACATTTGACGAACTGAATGAGAGTTTAGGAGGTCAATCATTTGAAGAAGCATCACCAAAGAGTTCTCCCTTAAGATCACAGATGGAAGTA AGTGATGTGGTGGACTTAGATTCCATCTTTCTTGCTGCTGTCGAATCTGATTTTAGCAGCAAAACTCCACTGAAAGAGGACCAGAGACATTTAGACATGT GTATCTTCGATGTTGAGTCCTTCAACGTGCCTTCCAAAGTGGAAAATCTGGATGCTGCTGCTACAATTGATCAACAGAATGTTAGTGAGAGCATTGGCGA ACAACATAACAGGATACCTGCTTGTCTTTCTTTTGAAGAAGCAGAGACTTCTTTCAGCCTGGATTTAGTGAAAGACCAAGAACAGAAGCAACTTAGCCTT GCAAACGATGATAGCTACATTCAGGAATTCCTTGTGGATGGACAAGATCAGCAATCCACAGAAGAGCAGAAACTGGAAATGCATCAATTGCAGGATCATA GCTCCCTAGAGAAACCGCAAGTCTACGAGAATGGCAACATTGAAGAAACCCTGGTGGATGAACAGAACCAGCAATCCACAGTAGAGCAAAAGCTGGAAAT GCAGGATCAAGTCCACGATAATGGTATGACAACTATCTGCTCTGTATCAGTGGTTACAGAATCTATAACCTCATCCATGTCAATGGAGGAACTTATCTCA GAGATCGTGGAGAATGAAGAGAGCACAACCCCGCAATCAACTCTTGCTCCCGTACAGAGTTTGGAAGATGGGAAGAGCGAGAGCGTCAAGTTAGTAAAGA GAACAAGGGTACAGCGAATTTGGCTCAGGAAAGGTGAACCTGCTTCAGCTGTTCAGCTCCGGAAAATTGAAATCATGGAGAATATTAAAGGTGATGCTGA AACTTGTTCATCACTAATCCCAAAGCTTCCTCCTTCCCCAGGTTCTAAATCAAGGAAACAACTCCTCACTCCAGACAAGGAGAACCGAAGCCCGAATTTC CATTTACCGTCTAGAACCAGAGGCAAGTTTGAAGGACTCAAAAGCTCCAGTTTAAGTCCAAAGATCACAGTTACCTCCAAAATCCTGGCAGAAGGGGAAA AGGAGAGCTCTACACCTAAAGAGATTGATCAACAAATGATAGCTACACCATCAACTTCAGCGGCCAAAGTGAAGTTAGGCCTTCAATTGGTGTTAAGGGA CAGAATGGGAGAAAGGATGCCCTTACAAAACCTCATTAACCGTTCACCTATGCTAAGCTTTTCTAGGGCTTCACTTAGCAGTGCTTCCACAGGAACGGCT GGTTCTTCCGCAGAGCAGTCTTCTGTTAACAGCATCAAAGGTAGAAAAAAGAGGTGGATTCTGGTGGTCGACACCATCTCTCTGCTGGATAACGGGTCGA GGAAGTCATTGCAGCTTCTACAAGGACTCAGGGGGACTCAGTTGATCATTCCAAGGATAGTCAAGAGTGAGCTCGACTCGTTGAAGACGGCTGGTAGATT GTTCAGAAGAACAACAGAGGCAGCTAAGGTGTTGGAATGGATCGAAGAGTGTAAGTCGGAGTCAAACTGGTGGATTCACGTCCAGAGTTCGGTCGAACTG TCTCCACTGTCGACGCCACCAGCTTCTTCACCCGAGTCAGGACCAGCCAGGAAAAGATGGTACAGCCCATTTTCGGCGAGCAGCAACATGGAAATGCCCT CACCGAGACCTAAAGATCACGTCCTTTCAAGTGCCTTGCTCTACAAGAAACTCCACTGCGATGGGAAGGTCGTCCTAATCAGCAAGGATGACAACCTGAA GATCAAAGCCATGGCAGAGGGTTTGATCTGCGAAACGGCTCAGGAGTTCCGCACCAGCTTGGTGAACCCGTTCTCCGAGAGGTTCTTATGGGCCGAGAGC TCTCCCAGAGGACACACTTGGTCTGTTAAAGATGACATAGTTTTGAAGGAAAGGTTTTACCAGAACCCTACAAGGAAGAAGCTGTCAAGGGGTGAGACTG CCACAGGTCTGAAGCTCATCTTGCTTGACGAATATCGAGATGGATTCCCCTGCAAATCCATCCGAACCGTGTAA
AA sequence Show only first row Show all	>Lus10009434 pacid=23149714 polypeptide=Lus10009434 locus=Lus10009434.g ID=Lus10009434.BGIv1.0 annot-version=v1.0 MVSSSKRQSERKIPVFSVFKDLSIIKNIFVLSPEKEDAGKSEKAPEIEEGRAPGAEMEEVLTVGRHPDCTIVMLHPSVSRRHFQINVTPSTHQLFVTDLG SVHGTWVSGRRIEPGARVEVGEGDTIVVGASTRVYRLNWVPLSRAYGMQNPSATAAMVEEREAITTTPQKKAQVKVRDSDEVREVLSRRLDGCGVAQKVA SEEFSGEVVSEMEEDGCSTRSGIKMPVLDEDSEVKMPEVKEDAKHQSMDSEEVLSSEKEAGISETVEKESPVRWELQSDVGVSIESLLPAKKEDDVVGET PQIYQYVPFPVGKEEIGRLYRKNDEPVKVSQLGIGSPAFPLVKQDALLVIKHEEAPVRSEGESSYLKLTNSDPEPSMMYTQEHSETAVGEVDSESILQQV LFPKEEETKVPLRNDNELTEVSCLGNGDSEYYSFKDSLAEGGSQDVSVLFQGESSEVANLYSSLLFAAVKAHLDRETSLMKNQDHLETARFEVNVSLTVE NLLEADQQQVSSGDKDETKSLSSSAVISELDCGSSSMKNQEGLETGLSELVCENSPMKNLEGFETCISELDCESSPMKNQGGLEIGLSEFNCETSSMNNQ KGLETDLSELDAVDGNLSRTESQHISLDKEDTEVTEVHNLSSSDENLLKSAPQLLSLEEKEEISSLPSSDNVVTEVASAVQTDFRDDRSSLMTDQKHLEI GLSDANSGNLPLMIENLSVVEFEETPFVGKEDNESQCEDGDEVEKYNELTRSPERYSIEDSATGEGNKNGSADLEIKNAESDELMINHDWDSAENGPPKR SSTESSERDIRMQDLDSLLVVEATEADLETSTSLDADSLNDLQQGSFSNERTETSQLGAGSLDVMKEKELTFDELNESLGGQSFEEASPKSSPLRSQMEV SDVVDLDSIFLAAVESDFSSKTPLKEDQRHLDMCIFDVESFNVPSKVENLDAAATIDQQNVSESIGEQHNRIPACLSFEEAETSFSLDLVKDQEQKQLSL ANDDSYIQEFLVDGQDQQSTEEQKLEMHQLQDHSSLEKPQVYENGNIEETLVDEQNQQSTVEQKLEMQDQVHDNGMTTICSVSVVTESITSSMSMEELIS EIVENEESTTPQSTLAPVQSLEDGKSESVKLVKRTRVQRIWLRKGEPASAVQLRKIEIMENIKGDAETCSSLIPKLPPSPGSKSRKQLLTPDKENRSPNF HLPSRTRGKFEGLKSSSLSPKITVTSKILAEGEKESSTPKEIDQQMIATPSTSAAKVKLGLQLVLRDRMGERMPLQNLINRSPMLSFSRASLSSASTGTA GSSAEQSSVNSIKGRKKRWILVVDTISLLDNGSRKSLQLLQGLRGTQLIIPRIVKSELDSLKTAGRLFRRTTEAAKVLEWIEECKSESNWWIHVQSSVEL SPLSTPPASSPESGPARKRWYSPFSASSNMEMPSPRPKDHVLSSALLYKKLHCDGKVVLISKDDNLKIKAMAEGLICETAQEFRTSLVNPFSERFLWAES SPRGHTWSVKDDIVLKERFYQNPTRKKLSRGETATGLKLILLDEYRDGFPCKSIRTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	0	1
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	2.0	0.9631
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	2.2	0.9725
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	3.5	0.9696
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	3.9	0.9630
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	4.1	0.9442
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	5.2	0.9658
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	5.5	0.9467
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	5.7	0.9526
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	6.5	0.9431
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	7.3	0.9609

Compare expression of checked genes

Lus10009434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.