Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 429 / 3e-147 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 234 / 7e-73 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G51220 105 / 4e-25 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G20880 106 / 6e-25 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G34790 102 / 4e-24 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G08290 102 / 6e-24 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT3G57670 102 / 1e-23 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT1G13290 100 / 2e-23 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT5G60470 101 / 5e-23 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G66730 101 / 7e-23 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006071 [exp] 669 / 0 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10023138 [exp] 228 / 2e-70 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10004887 [exp] 107 / 2e-25 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10033454 [exp] 105 / 3e-25 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10020923 [exp] 104 / 1e-24 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10029525 [exp] 103 / 1e-24 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10020597 [exp] 104 / 3e-24 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10011495 [exp] 97 / 8e-24 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10019927 [exp] 103 / 1e-23 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114600 [exp] 468 / 5e-162 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.019G085400 [exp] 432 / 5e-148 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.004G217100 [exp] 249 / 2e-78 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.007G094100 [exp] 238 / 3e-74 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.009G143700 [exp] 108 / 3e-26 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 108 / 4e-26 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.009G062300 [exp] 107 / 7e-26 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G267900 [exp] 105 / 7e-25 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.016G052700 [exp] 104 / 2e-24 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.010G129000 [exp] 102 / 2e-24 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF00096 [flax] [poplar] zf-C2H2 Zinc finger, C2H2 type
Representative CDS sequence Show only first row Show all	>Lus10009435 pacid=23149724 polypeptide=Lus10009435 locus=Lus10009435.g ID=Lus10009435.BGIv1.0 annot-version=v1.0 ATGGATCCTAAAGAAGTGCTATGCGGAGAACCATGGGCGAAACCTTCATCATCAAACGATCCAGACCCGAAGATCTCGTTACAGAACGTACCATCCCTTA TGGATTACGGGTTCAGGATCGATCAACCTTACCAAGACCGTACCGAAAACAACAACAACAAAGCTCCAGACTGGGATCCAAGGGCTATGCTCAACAACCT TTCATTTCTAGAGCAGAAGATCCACCAACTCCAAGGCGTGGTTCACTTGATCATCGGCCGAAAAGACCAGGAAGTTCCACCTCTCGGGAATAGGCCTGAT GAGCTCGTCACTCAGCAGCAGCAGCAGCTTGTAACCGCTGATCTAACATCGATCATCGTTCAGCTGATATCCACGGCTGGCAGTCTGCTGCCGTCAGTTA AGCACACACTGGCAGCAACGAATCCGATCGGTCAGTTTGAGCAGTTCGGACTGATTCAACCAAAACCACCTACTGGAACTGCTCCAGTTCCGGACCAGAC CGATTTGATGGACCTCGCTACAAACTACTCCACCGAAGAGCACGAAATGAAAGACGAGGAAGATACTGAGGATGGAGAAAATCTTCCTCCCGGTTCGTAC GAAATCCTGCAGCTCGAAAAGGAAGAGATCCTCGCCCCGCACACTCACTTCTGCACCATATGCGGGAAAGGGTTCAAGAGGGACGCCAACTTGAGAATGC ACATGCGAGGCCATGGCGACGAGTACAAGACCCCCGCAGCGCTTGCAAAGCCCCCGAAAGAAGCCACCAGTTCGGAGCCGACCGGTGCGGAGCCGGCGAT GATCAAGAGATACTCGTGTCCTTTCGCTGGCTGCAAGCGGAACAAGGATCACAAGAAGTTCCAGCCGCTGAAGACGATCCTCTGTGTCAAGAACCACTAC AAGAGAACTCACTGTGACAAAAGCTACATCTGCAGCAGGTGCCATACGAAGAAGTTCTCGGTCATCGCAGATCTCAAGACTCACGAGAAGCACTGCGGGA GGGACAAGTGGCTGTGCTCGTGCGGGACCACCTTCTCAAGAAAGGACAAGCTTTTCGGCCACATTGCTCTTTTCCAAGGCCACACCCCTGCTATCCCTCC TGATGAAACCAAAGCCTTATTCGAGAAAGGAGAAGATAGTAATAACATCGAAGCAGCAGCGGCAGCGAACAACAAGGTTGGAATAGGAGCTCTCGATTTC AACTGCCTCGGCTCGAACTCGAACATCATGGACTTCAAGTCAGTAGTAGCTGCTGACGATACTGCTGCAGCCACTGCTTGCTTCTCTCCTTTGAGCTTCG ATTCGTTTCAGGAGTTCAATCGGCAGCCATTCGACGATTCAGATAGTTCGTTCTCGTTTCTTTTATCCGGGTCGTGTAATTACAGCCAGAAATCTTGTGG GGATTCCTAG
AA sequence Show only first row Show all	>Lus10009435 pacid=23149724 polypeptide=Lus10009435 locus=Lus10009435.g ID=Lus10009435.BGIv1.0 annot-version=v1.0 MDPKEVLCGEPWAKPSSSNDPDPKISLQNVPSLMDYGFRIDQPYQDRTENNNNKAPDWDPRAMLNNLSFLEQKIHQLQGVVHLIIGRKDQEVPPLGNRPD ELVTQQQQQLVTADLTSIIVQLISTAGSLLPSVKHTLAATNPIGQFEQFGLIQPKPPTGTAPVPDQTDLMDLATNYSTEEHEMKDEEDTEDGENLPPGSY EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPPKEATSSEPTGAEPAMIKRYSCPFAGCKRNKDHKKFQPLKTILCVKNHY KRTHCDKSYICSRCHTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPPDETKALFEKGEDSNNIEAAAAANNKVGIGALDF NCLGSNSNIMDFKSVVAADDTAAATACFSPLSFDSFQEFNRQPFDDSDSSFSFLLSGSCNYSQKSCGDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	1.0	0.8342
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	3.9	0.7153
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	7.6	0.7804
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	7.7	0.7688
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	9.2	0.7219
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	17.0	0.7064
AT5G14540			Protein of unknown function (D...		Lus10018089 [exp]	18.4	0.7169
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	23.4	0.7670
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	26.6	0.7551
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	28.0	0.7317

Compare expression of checked genes

Lus10009435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.