Plant FIBer expression Database

Lus10009436 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039453
[exp]
58 / 5e-10 ND /
Lus10016934
[exp]
42 / 0.0001 AT1G71910 54 / 3e-09 unknown protein
Lus10014823
[exp]
41 / 0.001 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10009436 pacid=23149726 polypeptide=Lus10009436 locus=Lus10009436.g ID=Lus10009436.BGIv1.0 annot-version=v1.0
ATGGCCACCACCACTCAATCCCACGACGACGACTTCACTTTTCCGACCACCGCCGCCCCCTCCTCCTCCTCCTCCGTGGCCACGACCGGATTCGACTCTC
CTCCCCTTTGGCACATCTCTCCCACCACTTCTCCACTCCATCGTCACCACATCACTCAATGCACCAACTCTAATACCCCGGTTCTTTCCGACAAAAATTT
CGTTATTCAACATCATGCTCTCACGACCCAGTACACCTATCCTAACACCTCAACCCTTTCTGAAAAAAATCTCGATAGTCAACATCATATTCACATGACC
CAGTACACCAGTTCTAACAATATCCCAACCCTTTCTAACAATAATGGAAGTTCTTGTCGGAAAATAAAATCAACCCGTTTTGACAAGAATCTCGATCTCC
ACCTCCACGATCGCGAAAAAAGGAGCACGATACCAACCCGTTCTAGCAAAATTCTCGATCTCGATCTCCACGACCATGAGAAGATGGATATGTTGTGGGA
AGATTTCAACGAGGAGCTAACGGTGGTGGGTGCAGGCTCCGATAAGCCTAGAGTATACCATGTTCCCGGCCACAGAGGAACGTTACTCTCCCCGAAACCG
CAGAAGCGCGTCTGCCCCCCGCGCAACAACGGGAGGAGGGGCTCAGGTACAATCGCGAGTCCCTACTTCGCCGTCGCTCGGACGGACGCCGTCAGGGTCG
CCAGGGCAGCCAAGCTTCCCGGGCGCGGTCTCCAACACCGCCACCCAACCGATACCGCCGACCGACAACCACTATGGCCTCCGGGTTTTCCGAAATTGGA
AACAACGGTGAGGCCCCCGGAGCCTCGACAGGGGAATCAGAAAGGAGGACTTCAAGGATGGAGAGTGCCAAGCCCTGAATTGCCTTGA
AA sequence
>Lus10009436 pacid=23149726 polypeptide=Lus10009436 locus=Lus10009436.g ID=Lus10009436.BGIv1.0 annot-version=v1.0
MATTTQSHDDDFTFPTTAAPSSSSSVATTGFDSPPLWHISPTTSPLHRHHITQCTNSNTPVLSDKNFVIQHHALTTQYTYPNTSTLSEKNLDSQHHIHMT
QYTSSNNIPTLSNNNGSSCRKIKSTRFDKNLDLHLHDREKRSTIPTRSSKILDLDLHDHEKMDMLWEDFNEELTVVGAGSDKPRVYHVPGHRGTLLSPKP
QKRVCPPRNNGRRGSGTIASPYFAVARTDAVRVARAAKLPGRGLQHRHPTDTADRQPLWPPGFPKLETTVRPPEPRQGNQKGGLQGWRVPSPELP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009436
[exp]
0 1
AT1G54540 Late embryogenesis abundant (L... Lus10031317
[exp]
4.0 0.9237
AT1G54540 Late embryogenesis abundant (L... Lus10031888
[exp]
4.2 0.9396
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10039743
[exp]
7.4 0.9168
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10018525
[exp]
8.2 0.8919
Lus10021373
[exp]
8.3 0.9233
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10039349
[exp]
9.0 0.9073
AT4G02830 unknown protein Lus10042573
[exp]
12.3 0.9195
AT2G37530 unknown protein Lus10025320
[exp]
12.7 0.8829
AT5G10530 Concanavalin A-like lectin pro... Lus10029555
[exp]
13.0 0.8983
AT5G13580 ABCG6 ATP-binding cassette G6, ABC-2... Lus10030306
[exp]
13.9 0.9165

Lus10009436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.