Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71420 732 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 439 / 4e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 442 / 4e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 436 / 2e-141 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 436 / 4e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 441 / 9e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 429 / 2e-139 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 429 / 5e-139 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 427 / 3e-138 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 416 / 2e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006073 [exp] 1037 / 0 AT1G71420 471 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 455 / 2e-147 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 449 / 3e-145 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 441 / 2e-143 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012971 [exp] 437 / 2e-143 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035788 [exp] 429 / 4e-139 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 427 / 2e-138 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 434 / 4e-138 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 424 / 3e-137 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098800 [exp] 874 / 0 AT1G71420 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 470 / 2e-156 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 469 / 2e-154 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 470 / 4e-154 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 467 / 1e-150 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 436 / 2e-143 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 447 / 3e-143 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 443 / 7e-143 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 438 / 5e-142 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 436 / 5e-142 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009437 pacid=23149736 polypeptide=Lus10009437 locus=Lus10009437.g ID=Lus10009437.BGIv1.0 annot-version=v1.0 ATGACCCGACTTCCCGCAAGAGCGTGGCTTCATTCCATCAGGACTCATTTCTCCACCTCTACACTTCCCTCCACCACACTACCGCCGCAACTCACCAACC TCCGCGACACTCTCCGCGTGGCGTCCACTCGCGGCGAAGTTAGAGACTTAGTTTCCCAATTCTGCAGCCTATCGCCGCCGCCTCCGATCAACTACTCTGA GCACGCATACGCCGCCTTATTCCAAGCATGCGCCCGCCATGGCTGCCTCAACGAAGGCCGGAACCTACACCGTCACTTACTCTCCACCAATCACCTCCCC GCCGACCTCTTCCTCTCCAACCACATCGTCAACATGTACGCCAAGTGTGGAGACTTGGAGCATGCACGCGACCTGTTTGACGAAATGCCCCTGAGAAATA TCGTCACCTGGACAGCTTTGATCTCTGGATACGCTCAGTACGGCGCAGGGGAAGAGTGTTTCTCTCTGTTCTGCGATATGTTGGCGGCGGATGAGGATTG CCGCCCGAATGAGTTTTCCTTCACTAGCTTGCTCGCTTGTTGTGAGGATTTATACTGCGGAAAGCAAGTACATGGATTGGTTTTGAAAATGGGGTTGGAT TCTAGTGTCTACGTAGCTAATGCGATGATTACAATGTATGGCAAAGTTGGTGACTTTGGTTGTGGAGATGCATGGAAGGTGTTCGACGAAATGCGGGTTA AGAATCGTGTTTCCTGGAATTCGATGATTTCCGTGTTTCAGATTAGGAGACTGTTTGCGAAAGCCGTTGGCTTGTTTGGTGAAATGGTTACGAAAGGAAT CAGATTTGATCGTGCGACGTTGCTTAGTGTCATTGCTTCATTGAGTGGCAGTGAGAATAGTGTTAGCCATTGTAATCAGGTGCATTGTGTTTGTTTCAAA GCAGGGTTTGCCTCAGAGATTCAGGTATCCACTTCATTACTGAAAGCTTACTCTTTAGCTGGAGGTGAGCCTGATGAATGTTTGAGACTCTTCATGGAGA TGGATGGCAATCGAGATACTGTTTCGTGGACGACGATTATCACTGCTTTTTCGGAACATAAGCCCGAAGAATCGTTCTTTCTGTTCAGAGAGCTTATAAG GGAGGAAGGGCGGCTATCACCAGATTGGTTCACATTTTCGTCTGTGTTAAAAGCTTGTGCAGGGCTGGTGACTGAGAAATATAGTTTAGCTGTTCATTCA CAGGTGATCAAATCTGGATTCGAGTCCGACACTGTGCTATCGAATTCGTTGATCCATGCGTACGCAAGGTGTGGAGTCGTTTCCTTGTCGAAACGAGTTT TTCACGAGATGAAATACCGCGATGTTGTGTCTTGGAATTCGATGCTAAAGGCGTATGCTTTACATGGTAGAGGCGAAGAGGCGTTGGAGCTCTATTCGAA GATGGATGTTCGGCCTGATTCTGCTACCATGGTTGCATTGTTATCAGTATGCAGCCATGTGGGATTAGTAGCAAAGGGGATCGAGATTTTCGATTCGATG TATGGGAATCACGGTATTTCTCCTGAACTGGATCATTATGCATGTATGATTGATATCCTCGGGCGAGCTGGTCGTCTTTCTGAAGCTAAGGAGCTTATTA GTAGCATGCCAATGGAGCCTGATTCGGTCATTTGGAGTTCACTTCTTGGATCGTGCAGGAAGCACGGTAACACAGAATTAGCCAGATTTGCTGCTGCTAG ATTAAAAAAGCTAAACCCTGATAATTCGTTAGGCTATGTTCAAATGTCGAACATGTACTTCGTAGGCGGTAGTTACAACGAAGCAGGGCTAGTTAGAAAA GAAATGAAGAGTTCGAAGGTGATGAAAGAGCCCGGTTTGAGCTGGATCGAGATAGGAAACGAAGTGCACGAGTTTGCATCGGGTGGTAGACAGCATCCGG ATCGAGAAGCTATATACTTAAAGCTTGATGCTCTTGTTGCAGAACTAAGAGCGAAAGGGTACGTTCCTGATACGAGCTTGTCGTTTCATGATATAGACGA TGAACATAAGGAACAGGAAGTGTGTCGTCACAGCGAGAAGTTGGCTCTCGCGTTCTCATTGATTAATGGCGTCGAGAAGAGTTCAGGTTCTGGCGTAATT AGGATTGTGAAGAACATTCGGATTTGTGTTGACTGTCATAACTTCATGAAGTTGGCATCAGGTGTTCTTGAGAAGGAGATTGTGGTTAGAGACTCGAACC GGTTCCACCATTTCGAGAACGAGAAGTGTTCTTGCAGTGACTACTGGTAA
AA sequence Show only first row Show all	>Lus10009437 pacid=23149736 polypeptide=Lus10009437 locus=Lus10009437.g ID=Lus10009437.BGIv1.0 annot-version=v1.0 MTRLPARAWLHSIRTHFSTSTLPSTTLPPQLTNLRDTLRVASTRGEVRDLVSQFCSLSPPPPINYSEHAYAALFQACARHGCLNEGRNLHRHLLSTNHLP ADLFLSNHIVNMYAKCGDLEHARDLFDEMPLRNIVTWTALISGYAQYGAGEECFSLFCDMLAADEDCRPNEFSFTSLLACCEDLYCGKQVHGLVLKMGLD SSVYVANAMITMYGKVGDFGCGDAWKVFDEMRVKNRVSWNSMISVFQIRRLFAKAVGLFGEMVTKGIRFDRATLLSVIASLSGSENSVSHCNQVHCVCFK AGFASEIQVSTSLLKAYSLAGGEPDECLRLFMEMDGNRDTVSWTTIITAFSEHKPEESFFLFRELIREEGRLSPDWFTFSSVLKACAGLVTEKYSLAVHS QVIKSGFESDTVLSNSLIHAYARCGVVSLSKRVFHEMKYRDVVSWNSMLKAYALHGRGEEALELYSKMDVRPDSATMVALLSVCSHVGLVAKGIEIFDSM YGNHGISPELDHYACMIDILGRAGRLSEAKELISSMPMEPDSVIWSSLLGSCRKHGNTELARFAAARLKKLNPDNSLGYVQMSNMYFVGGSYNEAGLVRK EMKSSKVMKEPGLSWIEIGNEVHEFASGGRQHPDREAIYLKLDALVAELRAKGYVPDTSLSFHDIDDEHKEQEVCRHSEKLALAFSLINGVEKSSGSGVI RIVKNIRICVDCHNFMKLASGVLEKEIVVRDSNRFHHFENEKCSCSDYW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	0	1
AT5G13610			Protein of unknown function (D...		Lus10030300 [exp]	1.0	0.8251
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	13.0	0.7665
AT4G15820			unknown protein		Lus10043415 [exp]	18.2	0.8033
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	26.7	0.7375
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	28.1	0.7821
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	35.6	0.7792
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10040718 [exp]	54.1	0.7412
AT4G13720			Inosine triphosphate pyrophosp...		Lus10023678 [exp]	61.0	0.7630
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	80.9	0.7480
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	93.2	0.7416

Compare expression of checked genes

Lus10009437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.