Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 277 / 1e-88 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 204 / 6e-61 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 196 / 4e-59 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 197 / 1e-57 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 184 / 1e-55 RING/U-box superfamily protein (.1) AT5G66160 124 / 4e-32 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT2G17450 66 / 2e-12 RHA3A RING-H2 finger A3A (.1) AT3G19910 66 / 1e-11 RING/U-box superfamily protein (.1) AT5G06490 63 / 3e-11 RING/U-box superfamily protein (.1) AT3G55530 63 / 5e-11 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006074 [exp] 442 / 4e-153 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 374 / 8e-124 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 345 / 3e-115 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 130 / 5e-34 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 127 / 7e-33 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10022743 [exp] 67 / 1e-12 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10001683 [exp] 69 / 4e-12 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 68 / 4e-12 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10000513 [exp] 66 / 8e-12 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 354 / 1e-118 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 310 / 2e-101 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 132 / 3e-35 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.006G190500 [exp] 72 / 2e-13 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.003G176500 [exp] 72 / 4e-13 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 69 / 2e-12 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 65 / 5e-12 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.002G140500 [exp] 68 / 6e-12 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 67 / 1e-11 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.003G075200 [exp] 63 / 1e-11 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10009438 pacid=23149739 polypeptide=Lus10009438 locus=Lus10009438.g ID=Lus10009438.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCATCCAATTTCTCGTGCTTCTTCTTTGCTCTTGTCGTTCCCGTCTCATTCTCGAATATCGAGCCTGGGATGGCGACTCACCAGCTCCTCC AGCTTCTGCCTCCTCTGCCTGGATTGCCTCCACTCCCTTCCGCCGGCGACATCCCAAGGATTCCGACCATCCCAAATCTGCCTGGATTGCCTCCACTCCT ACCGACGACGACATTCCAACCATCCCAACTATGCCTGGATTGCCTCCGCTACCCTCCGCCGGTGACATTCCAACAATCCCAACCTTGCCTGGATTGCCTC CACTCCCTACCGGCGGGGGTGGACCCCCAAAAAAGAGTTCATTGGAATTTGCAGCCTAGTTCTTTCAAGTTGCTTACTGTTTTCTCATCTTCGATCTTGC GAAACTTTGCAGTGTCGGGGAATTCAGCTGGCATAAGCATACACGCAGTCTTCGTCACTAAATCCTCAGGCGAGACACTAAAGAACTTTGCTGGCTCGAC TGACACGGAAGTATGGATCATCCCCAGCTATGAGGATTCGGCGTGGTCGATCATGGCGATCTCTTTCATTTCTCTGCTGGCCATGTCAGCAGTCATGGCC ACTTGTTTCTTTGTCCGGAGGCATCGGATAAGAAGGGAACGCCCTCGATCGTCTCGCAGCGTTAGGGAGTTCCATGGGATGAGCAAGCGCCTCGTTAAAG CAATGCCGAGCCTCAATTTTACTACGGTCCAGGAGGATAACTGTACTTCGATGACTTGTGCTATCTGCCTCGAAGATTATAGCGTTGGCGAAAAGATCCG GATTCTGCCTTGTCGACACAAATTCCATGCTTTCTGTGTCGATTCATGGCTTACGACATGGCGAACCTTCTGTCCCGTGTGCAAGAGAGATGCACGAACT AGTAACGGAGAGCCACCAGCATCTGAATCTACACCATTGCTGTCATCAAACGCATCTTCGTTCGCTTCGTCTTCAGTCCTCTCGTCCTTTAGATCCACAA CATCATCAGCTATAAGAATCGGCCAGCCATCCCGATCCCCATCAGTCTCCCATTTCCCTTCTTATTCGGGCACTCCCTACGGCCAGCAGTCCATCGGATC ATATCACCAGTCACATTCACTTAGCATGAGCCGCAGCAACGCTGATCTTAGGAACATGTCCTCGCACCGTTCTTCCCACTTTTACCCTTCTATATCGCCC ATGAACGCGAGATACTTGTCCTTGTACAACAACCCGAGCCCCAGCAACGCCTCACCAAGCTTACTAGCCGGTGGTGGCTCCACGAGTTATCAGCTTCCTC GCCCGCTGCATTGTAGCGAGTCTGCTGCGAGCTTCTCGCCGTTTGCTTCCACTCATTCACTTCCGGACTGCTAG
AA sequence Show only first row Show all	>Lus10009438 pacid=23149739 polypeptide=Lus10009438 locus=Lus10009438.g ID=Lus10009438.BGIv1.0 annot-version=v1.0 MASSSNFSCFFFALVVPVSFSNIEPGMATHQLLQLLPPLPGLPPLPSAGDIPRIPTIPNLPGLPPLLPTTTFQPSQLCLDCLRYPPPVTFQQSQPCLDCL HSLPAGVDPQKRVHWNLQPSSFKLLTVFSSSILRNFAVSGNSAGISIHAVFVTKSSGETLKNFAGSTDTEVWIIPSYEDSAWSIMAISFISLLAMSAVMA TCFFVRRHRIRRERPRSSRSVREFHGMSKRLVKAMPSLNFTTVQEDNCTSMTCAICLEDYSVGEKIRILPCRHKFHAFCVDSWLTTWRTFCPVCKRDART SNGEPPASESTPLLSSNASSFASSSVLSSFRSTTSSAIRIGQPSRSPSVSHFPSYSGTPYGQQSIGSYHQSHSLSMSRSNADLRNMSSHRSSHFYPSISP MNARYLSLYNNPSPSNASPSLLAGGGSTSYQLPRPLHCSESAASFSPFASTHSLPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	1.0	0.9556
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	1.4	0.9279
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	11.8	0.8007
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	13.4	0.8396
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	13.7	0.8354
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	15.7	0.8200
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	18.2	0.8175
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	18.4	0.8282
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	20.3	0.8228
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	20.4	0.8177

Compare expression of checked genes

Lus10009438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.