Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71990 603 / 0 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) AT3G19280 84 / 2e-17 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G49710 72 / 2e-13 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006076 [exp] 808 / 0 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10019855 [exp] 77 / 8e-15 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 75 / 3e-14 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10002401 [exp] 72 / 2e-13 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10014060 [exp] 66 / 2e-11 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082200 [exp] 634 / 0 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 615 / 0 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.009G101500 [exp] 77 / 3e-15 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00852 [flax] [poplar] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Lus10009440 pacid=23149732 polypeptide=Lus10009440 locus=Lus10009440.g ID=Lus10009440.BGIv1.0 annot-version=v1.0 ATGCTCTTGAAGAGACCAGTCAACACAATCACCATATCCCTGATGCTGATCGCAACATTCCTCGTTCTCTTCTTCGCCGGCTTCCTCCAATTCCCTCCAG CCTCCTCATCCTTACCCGATTCGGTTTCCCAGTTCCGACCCCAGCAGACCAATTCCGACCCTTTCGTCGATTTGATCGCCGCTTTCAGGAAGTGGGATGT TCAGGTGGGTTGTCCTCGATTCAGGGAACTGCATAAGGAGGAGAGATTTAATGGGTCGGCTGGTTCTCTGCAGCGGGTTGGGACGGATTCGGAGTGTGGT GAGGAGCTGAAGATGGGGCATGTTAGTGTGTTGGTCAAAGGGTGGACTTGGATCCCTGATAATCTGGATAATTTGTACTCGTGTCGATGTGGGTTGAGCT GCTTGTGGACTAAATCGGCTGTTCTTGCTGACAAGCCTGATGCTTTGATGTTTGAAACCACTACTCCTCCATTTCAGAGGCGCAATGGAGATCCGCTTCG TGTCTACATGGACCTAGAAGCTGGCCGGAAACGCTCAGGAGTCGAAGATCTCTTCATCAGTTACCATGCCGGAGACGACGTTCAGTCAACTTATGCCGGC GCTCTGTTCCATAACGGTCGAAATTATCACGTGTCTCCACTGAAGAACAATGATACGCTCGTGTACTGGTCTTCCTCCCGCTGCCTTCCTCAAAGAAACA AGCTCGCAAAGAGCCTCCTCAGCTTGCTACCTCACCATTCGTTCGGAAAGTGCCTGAACAACGTCGGAGGACTCGACATGGCCATCTCGATGTACCCAGA ATGCGCCGCAACCAGCGAGACACCGAGATGGTGGGACCACCTACATTGTGCAATGTCACACTACAAGTTCGTCCTGGCAATCGAGAATACCGCCACCGAG AGCTACGTGACCGAGAAGCTTTTCTACGCATTGGATTCCGGCGCGGTCCCTATCTACTTCGGCGCGCCCAACGTTTGGGATTTCGTTCCGCCTAACTCAA TCATCGACGGGAGCAAGTTTAAATCCATGAAGGAGCTGGCTTCTTACGTTCAGGCTGTAGCAAACGATCCGGTGGCTTACGGGGAGTATCACGCATGGAG AAGGTGTGGTGTCATGGGGAACTACGCAAACACTCGAGCTTTGAGCCTCGACACATTGCCTTGCAGGCTGTGTGAAGCTGTCAGCAAACGTGGGGGTCGA AACTCGTAA
AA sequence Show only first row Show all	>Lus10009440 pacid=23149732 polypeptide=Lus10009440 locus=Lus10009440.g ID=Lus10009440.BGIv1.0 annot-version=v1.0 MLLKRPVNTITISLMLIATFLVLFFAGFLQFPPASSSLPDSVSQFRPQQTNSDPFVDLIAAFRKWDVQVGCPRFRELHKEERFNGSAGSLQRVGTDSECG EELKMGHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSAVLADKPDALMFETTTPPFQRRNGDPLRVYMDLEAGRKRSGVEDLFISYHAGDDVQSTYAG ALFHNGRNYHVSPLKNNDTLVYWSSSRCLPQRNKLAKSLLSLLPHHSFGKCLNNVGGLDMAISMYPECAATSETPRWWDHLHCAMSHYKFVLAIENTATE SYVTEKLFYALDSGAVPIYFGAPNVWDFVPPNSIIDGSKFKSMKELASYVQAVANDPVAYGEYHAWRRCGVMGNYANTRALSLDTLPCRLCEAVSKRGGR NS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	0	1
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	1.0	0.8981
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	2.4	0.8892
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	3.2	0.8545
AT1G72230			Cupredoxin superfamily protein...		Lus10008720 [exp]	12.5	0.8511
AT2G43630			unknown protein		Lus10013892 [exp]	18.5	0.8523
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	20.8	0.8166
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	21.9	0.8576
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10002812 [exp]	22.8	0.8576
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	23.0	0.8725
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	24.0	0.8491

Compare expression of checked genes

Lus10009440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.