Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09510 831 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 808 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 798 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G34860 751 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G72000 727 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 471 / 2e-160 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 449 / 5e-152 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 439 / 2e-147 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 432 / 9e-145 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006078 [exp] 976 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10014824 [exp] 905 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 905 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10042390 [exp] 734 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 732 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 724 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 719 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10043375 [exp] 479 / 1e-163 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 476 / 2e-162 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110800 [exp] 912 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.019G082000 [exp] 894 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.009G129000 [exp] 749 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 744 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 731 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.002G173600 [exp] 604 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 471 / 7e-161 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 469 / 3e-159 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 466 / 3e-158 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 466 / 1e-157 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10009441 pacid=23149702 polypeptide=Lus10009441 locus=Lus10009441.g ID=Lus10009441.BGIv1.0 annot-version=v1.0 ATGGATGGACCAAAGGAGCCAGTAGGTCTAAGAAATGTGAGCTCATCATGCTCCATATCAGAGATGGACGACTTCGATCTATCGCGTCTCCTCGACAAGC CGAAGCTGAACATCGAGAGGAAAAGATCGTTCGACGAGAGGTCGTTAAGCGAGCTTTCTGTCGGGATGGGAAGAGGAATGGATAACTACGAGAACACGTA CTCTCCCGGAGGGAGGTCCGTGTTCGACAGTCCAGCTTCATCAACTAGGAACTCGTTCGAACCCCATCCTATGGTGGCAGACGCTTGGGAATCTCTCCGA AGATCGATCGTGTACTTTAGAGGCCAGCCGGTTGGAACTATTGCTGCTGTTGACCATGCCTCTGAAGAGGTTTTGAACTATGATCAGGTTTTTGTTCGAG ATTTCGTGCCAAGTGCGCTTGCATTTCTCATGAATGGAGAGCCAGACATAGTAAAGAACTTCCTCTTGAAGACATTGCATCTTCAAGGATGGGAGAAGAG GATAGATAGATTCAAGCTTGGGGAAGGAGCTATGCCAGCCAGTTTCAAAGTCCTCCACGACCCTGATAGAAAGACAGATACGAAAGACAGATACTTTAAT CGCAGATTTTGGAGAGAGTGCAATCGGCAGGGTTGCTCCAGTCGATTCCGGATTCTGGTGGATCATCCTGCTACGTGCTTACACGAAGTCCACGGGAGAT ATGTCACTTGCAGAGACACCGGAATGCCAGAAGGGTATGAGACTCATCCTGTCCTTGTGTTTGTCCGAAGGGGAATATACGGTTACCCCATCGAGATCCA ATCATTGTTCTTCATGTCGTTGAGGTCAGCATTGTCGATGCTCAAGCACGATACAGAAGGGAACGAGTTCATCGAGAGGATCGTGAAGCGATTGCACGCG TTGAGCTTCCACATGAGGAGCTACTTCTGGCTAGACTTCCAGCAGCTGAATGACGTGTATCGTTACAAGACGGAGGAGTACTCTCACACCGCGGTGAACA AGTTCAACGTGATTCCGGACTCGATCCCCGAGTGGGTGTTTGAGTTCATGCCAACTCGAGGCGGATACTTCATAGGCAATGTGAGTCCGGCGAGGATGGA CTTCCGTTGGTTCGCCCTGGGCAACTGCATTGCCATCCTTTCTTCTCTAGCCACTCCGGAACAGTCGGTGGCAATCATGGACCTCATCGAAGCTCGATGG GAGGAGCTCGTTGGAGAGATGCCTCTGAAGATCGCTTACCCTGCGATCGAGAGCCACGAATGGAGGATCGTTACAGGGTGCGATCCGAAGAATACTAGGT GGAGTTACCACAATGGAGGTTCTTGGCCAGTGCTCTTGTGGATGCTGACGGCTGCCTGCATCAAGACCGGTAGGCCACAGATTGCGAGGAAAGCAATCGA TCTCGCCGAGACAAGGCTGCTCAAGGACAGCTGGCCGGAGTACTACGATGGCACAAAGGGTAGGTACATCGGGAAGCAAGCGAGGAAGTACCAGACGTGG TCGATTGCAGGGTATCTGGTGGCGAAGATGATGCTCGAGGATCCTTCGCATTTGGGGATGATCTCGCTCGAAGAGGACAAGCAAATGAAGCCAGTGCTCA AGAGATCATCCTCCTGGACTTGCTGA
AA sequence Show only first row Show all	>Lus10009441 pacid=23149702 polypeptide=Lus10009441 locus=Lus10009441.g ID=Lus10009441.BGIv1.0 annot-version=v1.0 MDGPKEPVGLRNVSSSCSISEMDDFDLSRLLDKPKLNIERKRSFDERSLSELSVGMGRGMDNYENTYSPGGRSVFDSPASSTRNSFEPHPMVADAWESLR RSIVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLHLQGWEKRIDRFKLGEGAMPASFKVLHDPDRKTDTKDRYFN RRFWRECNRQGCSSRFRILVDHPATCLHEVHGRYVTCRDTGMPEGYETHPVLVFVRRGIYGYPIEIQSLFFMSLRSALSMLKHDTEGNEFIERIVKRLHA LSFHMRSYFWLDFQQLNDVYRYKTEEYSHTAVNKFNVIPDSIPEWVFEFMPTRGGYFIGNVSPARMDFRWFALGNCIAILSSLATPEQSVAIMDLIEARW EELVGEMPLKIAYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARKAIDLAETRLLKDSWPEYYDGTKGRYIGKQARKYQTW SIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVLKRSSSWTC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10009441 [exp]	0	1
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	5.2	0.9567
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	8.9	0.9473
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	12.9	0.9555
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	15.0	0.9548
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	15.1	0.9518
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	15.7	0.9547
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	16.6	0.9519
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	18.7	0.9494
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	19.3	0.9470
AT5G57330			Galactose mutarotase-like supe...		Lus10026106 [exp]	24.2	0.9335

Compare expression of checked genes

Lus10009441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.