Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33030 319 / 1e-107 O-methyltransferase family protein (.1) AT5G54160 301 / 2e-100 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 266 / 2e-86 O-methyltransferase family protein (.1) AT1G63140 250 / 3e-80 O-methyltransferase family protein (.1.2) AT1G77530 242 / 5e-77 O-methyltransferase family protein (.1) AT5G53810 226 / 6e-71 O-methyltransferase family protein (.1) AT1G21100 221 / 4e-69 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21110 220 / 1e-68 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21120 219 / 2e-68 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G51990 218 / 7e-68 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014825 [exp] 358 / 8e-123 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10032929 [exp] 302 / 2e-100 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 301 / 3e-100 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 268 / 3e-87 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 261 / 1e-84 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 249 / 5e-80 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 247 / 3e-79 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10014400 [exp] 203 / 4e-62 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 202 / 6e-62 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G451100 [exp] 346 / 6e-118 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 330 / 9e-112 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 317 / 2e-106 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 305 / 6e-102 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 290 / 7e-96 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 289 / 8e-96 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 289 / 1e-95 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 289 / 1e-95 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 288 / 2e-95 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 284 / 5e-94 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10009442 pacid=23149730 polypeptide=Lus10009442 locus=Lus10009442.g ID=Lus10009442.BGIv1.0 annot-version=v1.0 ATGGCAGCAGACCACGATGACGATGAGCTGTACGCGATACAGCTCGCGACAGCTTCCGTCGTGCCCATGGCTCTAAAGGGCGCGATCGAGCTAGGCGTGT TGGACATCATAAACTCGGCTGGACCGGGAGCTTCCCTCACCCCTTCTCAGATCGCTTCCCACCTTGCTAATTATGGTGGTGGTGATCGTGATCGGGTTGA GTCGATTGCTGACCGGCTCGATCCGATCCTCCGACTCCTTTCTTCCCATTCAATCATGACTCGTGATGATGAGTCGATCCGCGGGTCGTACGGATTGGCG CCCGTGGCTAGGTTCTTTCTGAAGGGTGGTGATGGGTCTTTGGGTCCTTTGGTGTGTATGATTCAGGACAAAGTTATTCTTGATGCTTGGATGCATTTGA AGGATTCAGTGCTTGAGGGTGGAGGCAACGCATTCTACAAGGCTTACGGAATGAACGGTGGAGATTACTTGGGGAAAGATCCACGGTACAGGGAAGCTTT CTTCGGTTCCATCTCAGAGCTCAACCCTCTAATTATGGAGACATTCCTAAAAAGGTACTCTGGTTTTGAAGGCGTGGAGACACTTGTGGATGTTGGTGGT GGCAATGGCTATAGCGTTCATCTAATATCATCTAGGGTTCCGACTATTCGCAAGGTTATCAACTTCGATCTGCTTTCCGTCGTCGAAAAATCTCCACCAT ATCCAGGTGTGGAGCATATAGCAGGAGACATGTTTGAGAGTGTCCCAAAAGGAGATGCCATCTTCATGAAGTGGATTCTGCACCTATGGGACGATGAACA ATGCCTGAAACTCCTCACCAACTGCCACAAATCACTACCAGAGAATGGCAAAGTTGTAGCACTTGATGCTCTTGTCCCAGAGATCTCTAATGAAGCCATT ACTGTTGCTGCTAAGGCCATGCTCCAGTTCAGTCTTTACAGAAACAACACCAAACCTCAGGGCAAAGAGAGGACTCTCATCGAGTTCGATCGCTTGGCTA AACGAGCTGGATTCTCTCAGGCTCGTGTCGTTTGCTACGCCTACAACTTTGCCGTCTTCGAGTTCCACAAACTTGAATCATCATCCATCTAG
AA sequence Show only first row Show all	>Lus10009442 pacid=23149730 polypeptide=Lus10009442 locus=Lus10009442.g ID=Lus10009442.BGIv1.0 annot-version=v1.0 MAADHDDDELYAIQLATASVVPMALKGAIELGVLDIINSAGPGASLTPSQIASHLANYGGGDRDRVESIADRLDPILRLLSSHSIMTRDDESIRGSYGLA PVARFFLKGGDGSLGPLVCMIQDKVILDAWMHLKDSVLEGGGNAFYKAYGMNGGDYLGKDPRYREAFFGSISELNPLIMETFLKRYSGFEGVETLVDVGG GNGYSVHLISSRVPTIRKVINFDLLSVVEKSPPYPGVEHIAGDMFESVPKGDAIFMKWILHLWDDEQCLKLLTNCHKSLPENGKVVALDALVPEISNEAI TVAAKAMLQFSLYRNNTKPQGKERTLIEFDRLAKRAGFSQARVVCYAYNFAVFEFHKLESSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10042493 [exp]	1.0	0.9539
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	3.2	0.9300
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	3.5	0.9453
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	3.5	0.9254
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	3.6	0.9252
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	4.0	0.9279
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	5.3	0.9350
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	8.7	0.9152
					Lus10038520 [exp]	8.8	0.9374
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	9.8	0.9290

Compare expression of checked genes

Lus10009442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.