Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 156 / 3e-44 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 150 / 5e-42 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 108 / 4e-27 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 108 / 8e-27 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 108 / 8e-27 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G06536 41 / 0.0004 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020190 [exp] 255 / 2e-84 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 163 / 2e-46 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 158 / 1e-45 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 154 / 5e-43 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 123 / 6e-34 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 94 / 2e-21 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 78 / 8e-18 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 61 / 4e-10 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10018730 [exp] 45 / 3e-05 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 161 / 4e-46 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 156 / 4e-44 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.014G025000 [exp] 49 / 2e-06 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.002G123800 [exp] 49 / 2e-06 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10009445 pacid=23149709 polypeptide=Lus10009445 locus=Lus10009445.g ID=Lus10009445.BGIv1.0 annot-version=v1.0 ATGACAAGCTCATCGGAAATTCCGAAGAAGCTCGGCCCGGCCTCGAGCTTCGCCGTGGTTTCGCCGGATAAGCTCTCGGTCAAGTACTATGGCGTGGGGG CCTACTATGTGGGAGCCGTGCAGGCTGAAAAGCCAGCGCCGGTCAACAGGACGACTGCGTATTACTTCGAGATGCGGGTCAAGAACGGCGGAGCGAACGG CTTTATTGCGATCGGTTTCACGAAAGCGGGGTATGACTTGACACGTCATCCCGGGTGGGAAGCTAATAGTGTTGGGTATCATGGCGACAATGGCATGTTT TACATCAATGGAGTAAAAACGATTCCTCCTACGACGACCTTTAGGAAAACCTTTACGAAGAACGACGTCGTTGGAGCTGGTATCGACTATGTTTCAAAAG AGTTTTTTTTCACAAAGAACGGAAGGATAGTTGGCACAATATTCAAAGATTTTGATGGTTCAGTCTTCCCCACTGTTGCGGTTCATAGCAAGGATGAAGA GGTCGAGGTCAACTTTGGACAAAAACCGTTTGCATATGATCATCCTGAAATCTTGAAAGAGAAGCTGAAAAAACTGGAGAAGACACTCGAAGAAAAGGAA AAGGAGGTGGTTGATTTGAAATCGAAGGCACTCGAAGAAAAGGAAAAAGAAGTGGCTGATTTGAGATCGTCTAATGTGGCTTCAGAGGAAAAATGGAAGA AGCTTTTGGAGGAGAGGCTCGACAAATTAATGGAGAAGAGCGAGTTGTTGCTGAAGAAGCCCGCACTCAAAGAAGAAGAAGAGGGAAAAGAGTGTGTTGG TGGTCGCCATTGTTGTGGATTGGAGAAGGTAATTGAGGAGAAAGACAAGGAATTGGCTTCTTTCAAAAATGCTTTCATGGAGCTACTCAATTAG
AA sequence Show only first row Show all	>Lus10009445 pacid=23149709 polypeptide=Lus10009445 locus=Lus10009445.g ID=Lus10009445.BGIv1.0 annot-version=v1.0 MTSSSEIPKKLGPASSFAVVSPDKLSVKYYGVGAYYVGAVQAEKPAPVNRTTAYYFEMRVKNGGANGFIAIGFTKAGYDLTRHPGWEANSVGYHGDNGMF YINGVKTIPPTTTFRKTFTKNDVVGAGIDYVSKEFFFTKNGRIVGTIFKDFDGSVFPTVAVHSKDEEVEVNFGQKPFAYDHPEILKEKLKKLEKTLEEKE KEVVDLKSKALEEKEKEVADLRSSNVASEEKWKKLLEERLDKLMEKSELLLKKPALKEEEEGKECVGGRHCCGLEKVIEEKDKELASFKNAFMELLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	0	1
AT2G36650			unknown protein		Lus10023883 [exp]	2.8	0.9526
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	4.0	0.9536
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	6.3	0.9360
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	6.7	0.9451
AT1G75720			Plant protein of unknown funct...		Lus10024335 [exp]	7.4	0.9360
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	7.5	0.9433
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	7.9	0.9188
					Lus10025868 [exp]	8.4	0.9434
					Lus10038232 [exp]	9.8	0.9434
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	9.8	0.9446

Compare expression of checked genes

Lus10009445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.