Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35510 761 / 0 O-fucosyltransferase family protein (.1) AT2G01480 607 / 0 O-fucosyltransferase family protein (.1) AT1G14970 594 / 0 O-fucosyltransferase family protein (.1) AT1G38131 531 / 0 O-fucosyltransferase family protein (.1) AT1G38065 521 / 0 O-fucosyltransferase family protein (.1) AT3G26370 306 / 1e-96 O-fucosyltransferase family protein (.1) AT4G24530 300 / 1e-94 O-fucosyltransferase family protein (.1) AT5G65470 298 / 5e-94 O-fucosyltransferase family protein (.1) AT4G38390 289 / 3e-90 RHS17 root hair specific 17 (.1) AT1G22460 286 / 6e-89 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001545 [exp] 931 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 588 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 583 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 561 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 554 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 484 / 3e-167 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 482 / 5e-166 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 299 / 4e-94 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 296 / 2e-93 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080900 [exp] 833 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 620 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 615 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 482 / 2e-164 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 475 / 7e-162 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 310 / 2e-98 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 305 / 1e-96 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 304 / 5e-96 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 303 / 1e-95 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 299 / 2e-93 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009450 pacid=23149747 polypeptide=Lus10009450 locus=Lus10009450.g ID=Lus10009450.BGIv1.0 annot-version=v1.0 ATGCACGGCTACAGCCGGCTCGGCGGGGGCTCGGTCGCGCTTTCTGGCCGGTGTTTTTATTGTTCCTCCCCTCCCTATGCTCCCTCCTNNNNNNNCCCGC GCCCCTCCCCCACCCCCACCCGCCACTCCGGAGTGGCTGTGACGTACGGAGGAGGATTTGGAAAGGGGAGCGGCGGAGCTGTGGCGAAGGAGAATTTGGT GGAGAGATTTGTTTTTCTGGTGATATCATTGGTTTTCAGGCGGAGGGGGTTGTTGCTGTTTGCTCCTTTGTTGTATATATCCTGGGTGCTGTTGTACATG GGATCGATAGGATTTGATGTTGATTTGGATTTGAAGCATGGAGTCGTCGGCGGGGTGGTTCTGCGGCGAAGGAATGAACCAAGGGGGTCGGTGTACCGGA GTCCTCAGGTGTTCAGGAATCTTTGGCCGTATATGGAAGCTGAGAGTGGCGGTGGCAATGGAAGCAGCTCGAATGCGTTGATGAGAAGTTGGGATCCGAA TTTGCTTCAGGATTGGAAGCCATGTCTCAACGGCAATGTGACTAATTCAGGATTGCCGGAGTCTAATGGTTTCCTTATAATTGAAGCCAATGGTGGATTG AATCAACAACGGTTATCGATATGTGATGCTGTTGCTGTAGCAGGATTACTAAATGCGACCCTTGTCATTCCGATATTCCATTTGAACAGCGTTTGGCGTG ATTCCAGCAAATTTGGAGACATATTTGATGAAGAATTCTTCATCGATGTCCTGAAGAATAATGTGAATGTAGTTCGTCAACTCCCGAAAGATGTGCTTGA GCAGTTTGATAATAATATAAGCAGCATTGTAAATCTAAGAGTGAAAGGATGGTCCAGTCCAACGTACTATCTCCAGAAGGTGCTTCCCAAGCTCAAAGAG ATGAGGGCTGTTCGAATTGCACCTTTCTCCAATAGGCTGGCTCATGCAGTTCCTCCTAATGTCCAGGATCTTAGATGCTTGGCTAATTTCCAAGCACTTA GATTCTCGGAATCATTGAGAACACTTGGCGATAAAATGGTTGAGCGGATGGTTCAGAATAGTTCTCACACAGCGGGGAAATATGTTTCAGTCCATCTTCG ATTCGAAGAGGACATGGTTGCCTTTTCATGTTGTGAGTATGACGGTGGGGAAGAAGAGAAACTCGAAATGGATCTTGCTCGAGAGAGAAGCTGGAGAGGG AAATTTAGGAAAAGGGGAAGAGTAATAAGACCGGGAGCAAATCGTTTGGACGGGAAATGTCCTCTCACTCCATTGGAGGTGGGAATGATGCTTCGGGGAA TGGGCTACGACAGCAGCACCCCATTGTACGTTGCAGCGGGTAATATTTACAAGGCGGAGAAGTATATGGCTCCACTTAAGCAGATGTTTCCTCGCCTAGA AACAAAAGATACATTAGCTACCCCTGAGGAACTCGCATCATTTAAGGGCCATTCGTCTAGGTTCGCGGCTCTCGATTATACAGTTTGCTTGCACAGTGAA GTCTTTGTCACCACTCAAGGAGGGAACTTTCCACACTTCTTGATGGGTCACAGGCGTTACCTATACGGTGGCCATTCGAAAACTATCAGACCTGACAAAA GGAAGTTGGCCGTCTTGTTCGATAGCCCCCGTGTCAGATGGAAAGTGTTCAAGCGGCAGATGCAGGACATGCTCCGACACAGCGACATCAAAGGTTGCGA GATTAGAAAGCCTTCAGCATCCCTCTACACATTCCCGATGCCGGATTGCATGTGCAGGATACCAAAGGAAGAAGAATCGCCACAATCCATACCACGAGAG GATTCTGAAAGCTGA
AA sequence Show only first row Show all	>Lus10009450 pacid=23149747 polypeptide=Lus10009450 locus=Lus10009450.g ID=Lus10009450.BGIv1.0 annot-version=v1.0 MHGYSRLGGGSVALSGRCFYCSSPPYAPSXXXPRPSPTPTRHSGVAVTYGGGFGKGSGGAVAKENLVERFVFLVISLVFRRRGLLLFAPLLYISWVLLYM GSIGFDVDLDLKHGVVGGVVLRRRNEPRGSVYRSPQVFRNLWPYMEAESGGGNGSSSNALMRSWDPNLLQDWKPCLNGNVTNSGLPESNGFLIIEANGGL NQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEEFFIDVLKNNVNVVRQLPKDVLEQFDNNISSIVNLRVKGWSSPTYYLQKVLPKLKE MRAVRIAPFSNRLAHAVPPNVQDLRCLANFQALRFSESLRTLGDKMVERMVQNSSHTAGKYVSVHLRFEEDMVAFSCCEYDGGEEEKLEMDLARERSWRG KFRKRGRVIRPGANRLDGKCPLTPLEVGMMLRGMGYDSSTPLYVAAGNIYKAEKYMAPLKQMFPRLETKDTLATPEELASFKGHSSRFAALDYTVCLHSE VFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLAVLFDSPRVRWKVFKRQMQDMLRHSDIKGCEIRKPSASLYTFPMPDCMCRIPKEEESPQSIPRE DSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	0	1
AT5G10660			calmodulin-binding protein-rel...		Lus10026227 [exp]	4.2	0.7518
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	8.4	0.8221
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	9.2	0.7562
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	9.2	0.7522
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	12.0	0.7192
AT4G26620			Sucrase/ferredoxin-like family...		Lus10016627 [exp]	14.0	0.7271
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	18.8	0.7724
AT5G42860			unknown protein		Lus10009749 [exp]	20.8	0.7497
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10012595 [exp]	22.3	0.6803
AT1G29530			unknown protein		Lus10004585 [exp]	28.6	0.6847

Compare expression of checked genes

Lus10009450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.