Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 560 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 516 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 265 / 6e-84 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 265 / 6e-84 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 219 / 8e-67 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G06060 74 / 4e-15 LisH and RanBPM domains containing protein (.1) AT1G61150 61 / 3e-10 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 45 / 4e-05 LisH and RanBPM domains containing protein (.1) AT5G66810 44 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001544 [exp] 858 / 0 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 256 / 4e-81 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 168 / 4e-48 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 167 / 4e-47 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 139 / 2e-37 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 107 / 7e-25 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 78 / 4e-16 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10004152 [exp] 67 / 2e-12 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 66 / 5e-12 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 618 / 0 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 602 / 0 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G029700 [exp] 69 / 4e-13 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.011G046200 [exp] 65 / 1e-11 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 59 / 8e-10 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.005G233000 [exp] 59 / 1e-09 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.007G081900 [exp] 46 / 7e-05 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.005G083800 [exp] 45 / 9e-05 AT2G22010 1726 / 0.0 related to KPC1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10009451 pacid=23149748 polypeptide=Lus10009451 locus=Lus10009451.g ID=Lus10009451.BGIv1.0 annot-version=v1.0 ATGGCCACCGCTGCTAACAAGACCACCGTCGCTTCCACCAATTACAGCAGCAACAATGGGAACACGACCACCACCACCACTAGCAGCAATTCCGGCAATC CGACCCACCAAGATCCGGCTGCCTACTTCCTCGCTATGGCGTCAGAATCCGCTGTGTACAGGGAGGAGGAACGGGAGCGGAAGGATCGGGAAGATGCGCC CACGGAGCTGAACACGATTAACAGCTCGGGAGGATTTGTCGCCGTGTCGACGGATAAGCTTTCGGTGAAGTACACGCACGTCAATCACCACGGACACGAC GTCGGAGCTGTGCAGGCCAACAAGCCGGCTCCGGTTAAGAGACTGGTGTATTACTTTGAGATGACTGTGAGGAACGGCGGTGCTAGAGGGCAGATTGCGA TTGGGTTCACTCATGAAACGTTCAAGATGTGCAGGCAACCCGGGTGGGAAGCTAACAGTTGTGGGTATCATGGGGATGATGGCCATCTTTATCATGGTCA AGGAAAGGGTCTGCCTTTCGGCCCAACTTTCACAACCAAGGATACTGTTGGCGCTGGTATTAACTATGCTTCGCAGGAGTTCTTTTTCACTAAAAACGGA GCACTTATTGGGACAGTAAAAAAGGAGATCAAGGATTCCCTATTTCCTACTGTTGCCGTTCACAGCCAGAATGAAGAGATTGAAGTTAACTTTGGCCAAA AGCAATTTGCATTCGATATCAAGGCAAGATCCCCATTCTTTACTTCTTCACTTTGCTTCTTTTCGGACTATGAAAGACAGGAAAGGATGAAGCAACACTT GGTCATTGACAAAATATCTTTGCCACAAAATGTCAGCCATGGACTCGTGCGATCATACTTGCTGCACTATGGTTATCAGGCTACCCTCAATTCTTTTGAG TTGGAGTGTAAAAGTACAGTTCCTCCAATATTGATGTCTCAGGAAAATGGCCTTGATTCTCAAGACATACTATATGCATTAAATCAGAGGAGAGAACTTC GACAGCTAATCAGGAATGGCGAGATTGATGCTGCTATTTCTAAACTTCGTGATTGGTTCCCGCAGATTCTTGAGGACGAAAAATCAGCTACTTGCTTTCT GCTCCACTGTCAAAAGTTCATCGAATTAGTTCGGATTGGTGAACTGGAGGAAGCTGTGAATTATGGAAGAATCCAACTGGCAAAGTTCTTCGGGATGCCG GTTTACAACGATCTAGTTCAGGATTGTGTTTCGCTGCTAGCATACGAGCAACCGCTAAGATCCTCAGTCGGCTATCTTCTCGAAGACTCACAACGCGAGG TAGTAGCAGACACGGTCAACACCATGGTGCTGCTGACAAACCCGAACGGGAAGGACTTACAAGGATGCTTGCAGTCGTATCTCGAGAGGTTAGTGAGGCA AATAACCGTTTGCTCCCTCGAGAAACAGTCCTTGAACAATGACCAGGGTGAGGCTTTTAGTCTACACAGGGCACTTAACAGTAACTACAATGCCAAGAGC TAA
AA sequence Show only first row Show all	>Lus10009451 pacid=23149748 polypeptide=Lus10009451 locus=Lus10009451.g ID=Lus10009451.BGIv1.0 annot-version=v1.0 MATAANKTTVASTNYSSNNGNTTTTTTSSNSGNPTHQDPAAYFLAMASESAVYREEERERKDREDAPTELNTINSSGGFVAVSTDKLSVKYTHVNHHGHD VGAVQANKPAPVKRLVYYFEMTVRNGGARGQIAIGFTHETFKMCRQPGWEANSCGYHGDDGHLYHGQGKGLPFGPTFTTKDTVGAGINYASQEFFFTKNG ALIGTVKKEIKDSLFPTVAVHSQNEEIEVNFGQKQFAFDIKARSPFFTSSLCFFSDYERQERMKQHLVIDKISLPQNVSHGLVRSYLLHYGYQATLNSFE LECKSTVPPILMSQENGLDSQDILYALNQRRELRQLIRNGEIDAAISKLRDWFPQILEDEKSATCFLLHCQKFIELVRIGELEEAVNYGRIQLAKFFGMP VYNDLVQDCVSLLAYEQPLRSSVGYLLEDSQREVVADTVNTMVLLTNPNGKDLQGCLQSYLERLVRQITVCSLEKQSLNNDQGEAFSLHRALNSNYNAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	0	1
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	1.4	0.8400
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	5.1	0.7320
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	7.9	0.8003
AT4G30790			unknown protein		Lus10007701 [exp]	8.6	0.8039
AT3G11240		ATATE2, ATE2	arginine-tRNA protein transfer...		Lus10040189 [exp]	13.4	0.7596
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	15.9	0.7117
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	16.9	0.7357
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	17.2	0.7056
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	18.2	0.7114
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	19.8	0.7394

Compare expression of checked genes

Lus10009451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.