Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 372 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 368 / 2e-123 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 322 / 1e-105 PATL2 PATELLIN 2 (.1) AT1G72150 301 / 1e-98 PATL1 PATELLIN 1 (.1) AT1G30690 288 / 9e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G51670 282 / 5e-93 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22180 62 / 5e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 61 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 60 / 5e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 60 / 6e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001542 [exp] 610 / 0 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 366 / 3e-127 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001269 [exp] 296 / 4e-98 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10038435 [exp] 298 / 7e-98 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10012219 [exp] 290 / 3e-97 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031752 [exp] 291 / 9e-94 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 217 / 7e-67 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 203 / 2e-64 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10009458 [exp] 186 / 1e-55 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106000 [exp] 444 / 1e-153 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 443 / 2e-153 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 422 / 2e-145 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 421 / 4e-145 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 415 / 1e-142 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 397 / 7e-136 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 389 / 8e-133 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 336 / 8e-113 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 290 / 4e-96 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 239 / 7e-76 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10009453 pacid=23149712 polypeptide=Lus10009453 locus=Lus10009453.g ID=Lus10009453.BGIv1.0 annot-version=v1.0 ATGATCAAGAACACTGTCCGTTGGAGGAAGGAATTCGGAGTTGATTCGCTCCTGGAAGAAGATCTCGCCGGCAACAACGAATTGGACAAAGTGGTGTTCA TGAAAGGAACCGATAAGGAAGGCCACCCAGTCTGCTACAACGTCTTTGGCGGGTTCCAGGATAAGGAGCTTTACTCCTACTGCTTCTCCGACGAGGAAAA GCGCAAGACTTTCCTCCGGTGGAGGATCCAGCAGCTCGAGAAGAGCATCCGGAAGCTCGATTTCTCGCCTTCCGGTATCAACACGATCGTCCAGATCAAC GATCTAAGGAATTCGCCTGGCCCTACCAAGAGCCATCTCAAGAAGGCCATGTCTCAGGTCATCTCCTTGCTCCAGGATAACTACCCGGAATTCGCCGCTA GACAGGTGTTCATAAATGTGCCATGGTGGTACGCAGCATTCAACAAGATGATCACCCCATTCCTCACTCAGAGGACTAAGAGCAAGTTCATGTACGCCAC ATCTTCGAAATCGGCAGAAACCCTATTCAAGTACATAACTCCTGAACAGGTACCGATTCAGTACGGAGGGTTAAGCAAGGACGGCGACGACAACGAATTC ACTACCGAAGATGCTACGACCGAACTCGTGCTCAAGCCGACATCGAAGCACACTATCGAGATCCCTGCTGCCGAGGGCGACACTTTGGTGTGGGAGCTGA GGGTGTTGGGATGGGAAGTGAGCTACGGTGCTGAGTTCGCCCCTAGCGTTGAGAACGCATACACGGTGATTGTATCGAAGAACCGGAAGGTTGCTCCGGC CAGTGACGAGTCACCGGTGATCAGCGACACGTTCAAGGCAGGGGAAGCAGGGAAAGTGGTGATCACCATTGATAACCAGAGTGGGAAGAAGAAGAAGGTG CTTTACAGAACCAAGACCAAACCAGTTTCTTAA
AA sequence Show only first row Show all	>Lus10009453 pacid=23149712 polypeptide=Lus10009453 locus=Lus10009453.g ID=Lus10009453.BGIv1.0 annot-version=v1.0 MIKNTVRWRKEFGVDSLLEEDLAGNNELDKVVFMKGTDKEGHPVCYNVFGGFQDKELYSYCFSDEEKRKTFLRWRIQQLEKSIRKLDFSPSGINTIVQIN DLRNSPGPTKSHLKKAMSQVISLLQDNYPEFAARQVFINVPWWYAAFNKMITPFLTQRTKSKFMYATSSKSAETLFKYITPEQVPIQYGGLSKDGDDNEF TTEDATTELVLKPTSKHTIEIPAAEGDTLVWELRVLGWEVSYGAEFAPSVENAYTVIVSKNRKVAPASDESPVISDTFKAGEAGKVVITIDNQSGKKKKV LYRTKTKPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	2.8	0.9705
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	3.7	0.9549
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.3	0.9650
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	8.5	0.9543
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	8.5	0.9519
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	8.8	0.9603
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	9.2	0.9590
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	11.0	0.9587
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	12.0	0.9499
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	12.2	0.9549

Compare expression of checked genes

Lus10009453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.