Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 181 / 1e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 180 / 4e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 179 / 6e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 171 / 2e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 168 / 1e-49 GLIP7 GDSL-motif lipase 7 (.1) AT5G45670 166 / 7e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 157 / 3e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 155 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 130 / 5e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001540 [exp] 320 / 7e-110 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10009457 [exp] 297 / 4e-103 AT1G71691 209 / 6e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10016929 [exp] 272 / 1e-89 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015242 [exp] 229 / 1e-73 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 176 / 2e-52 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 174 / 7e-52 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032399 [exp] 174 / 2e-51 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000893 [exp] 171 / 1e-50 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 168 / 3e-49 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102500 [exp] 247 / 3e-80 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 246 / 2e-79 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 178 / 2e-53 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 176 / 1e-52 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 169 / 6e-50 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 167 / 3e-49 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 140 / 3e-39 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 137 / 1e-37 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G089100 [exp] 134 / 2e-37 AT5G45670 128 / 9e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 135 / 4e-37 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10009455 pacid=23149704 polypeptide=Lus10009455 locus=Lus10009455.g ID=Lus10009455.BGIv1.0 annot-version=v1.0 ATGGCTTCAAGCACCAAGCTTTTTGCTTTCCTAGCAATTTTGGCCACATTTTCCCAACTGGGTAGCAGCCAGTTCTTCAATGGCACCATCGGAGGAGGAG ATGATTCTACTGCCGCCCAACGAGGTTCACCAGCGCCGCAAGCACTAGCTCCGGCGATGTTCGTGTTCGGAGACTCGCTGATCGACAACGGCAACAACAA CAACTTGCCCTCCTTTGCGAAGGCCAACTACTTCCCTTACGGCATCGACTTCAACGGCGGTCCCACCGGCCGGTTCTGCAATGGGTACACCATGGTCGAC CAAATCGCTGAGCAACTGGGGTTGCCGTTGATTCCGCCGTACACTCAAGGAGGCGACGTGACTCACGGCGTTAACTATGCCTCCGCCGCCGCCGGGATCC TTGACGCCACCGGAAGAAACTTCATGCTTTACAATCTGGGGGCGAGAAAAGTGGCGATAGCTGGGCTTGGAGTAATGGGCTGCATCCCCAGCATTTTGGC CCAAAACCCAGCTGGACGTTGCTCTGAGCAAGTAAACAATCTCATTACTCCCTTCAACCAAAATGTGAAGGCAATGATCAACCACTTGAACTCCAACCTA CCCGGCGCAAGGTTCGTCTACATCGACATTCATCGAATGTTCAGCGACATGATCGCTAACTCGAGAAACTACGGGTTTAAGGTGACGAATAGAGGCTGCT GCGGGGTTGGGAGGAATGCCGGACAGATAACGTGCTTACCGTTCCAGACACCATGTAGAAACCGGGCCCAGTACATTTTTTGGGACGCGTTCCACCCGAC CGAGGCGGTGAATGTGATGATGGGGAAGAAAGCTTTCGCTGGAGACATGAGCTATGTTTACCCTATCAATATCGAGCAGCTTGCTCGAATTGGATGA
AA sequence Show only first row Show all	>Lus10009455 pacid=23149704 polypeptide=Lus10009455 locus=Lus10009455.g ID=Lus10009455.BGIv1.0 annot-version=v1.0 MASSTKLFAFLAILATFSQLGSSQFFNGTIGGGDDSTAAQRGSPAPQALAPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFCNGYTMVD QIAEQLGLPLIPPYTQGGDVTHGVNYASAAAGILDATGRNFMLYNLGARKVAIAGLGVMGCIPSILAQNPAGRCSEQVNNLITPFNQNVKAMINHLNSNL PGARFVYIDIHRMFSDMIANSRNYGFKVTNRGCCGVGRNAGQITCLPFQTPCRNRAQYIFWDAFHPTEAVNVMMGKKAFAGDMSYVYPINIEQLARIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	0	1
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	1.0	0.9761
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	3.6	0.9507
AT4G10950			SGNH hydrolase-type esterase s...		Lus10000876 [exp]	4.8	0.9336
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.0	0.9697
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	6.9	0.9680
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	7.3	0.9693
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	8.0	0.9195
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	9.7	0.9670
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	10.2	0.9650
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	10.4	0.9669

Compare expression of checked genes

Lus10009455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.