Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72190 456 / 3e-157 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT4G34200 116 / 5e-27 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 108 / 1e-24 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT2G45630 100 / 6e-23 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT3G19480 99 / 1e-21 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 96 / 3e-21 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 94 / 1e-20 FDH formate dehydrogenase (.1) AT1G79870 80 / 5e-16 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 72 / 3e-13 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G01510 49 / 1e-05 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014096 [exp] 110 / 4e-25 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 107 / 3e-24 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 105 / 2e-23 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10025796 [exp] 100 / 9e-23 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 100 / 1e-22 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 99 / 2e-22 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 97 / 1e-21 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10032150 [exp] 97 / 2e-21 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10036537 [exp] 94 / 2e-20 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104200 [exp] 512 / 4e-179 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.014G022800 [exp] 112 / 6e-26 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 108 / 1e-24 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 108 / 1e-24 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.002G151100 [exp] 105 / 2e-24 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.008G009500 [exp] 105 / 1e-23 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 105 / 2e-23 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 103 / 6e-23 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.014G073400 [exp] 98 / 7e-22 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 96 / 1e-21 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10009456 pacid=23149713 polypeptide=Lus10009456 locus=Lus10009456.g ID=Lus10009456.BGIv1.0 annot-version=v1.0 ATGTACGGCCAAAATCTCCGGCGAGCGTTGCAGAATCAACCAGCACCGTCGCCAGCGTCTCATCCAGCTCCCTCTGTTCCCGCCGCCTCCTCCCTCTCCG TTCCTTCTCAGGTCAAATATCACCGAATTCCATTTCATCATTTCCTCTCATTTTGCTGTTCCATTGCTTATCTCCGATTCTCTCTTACCGATTCTCCTGC TTCAGCTACAATCCGTAAGAAGGAGGATCTGAGCATGGTCGGAGTAGGCGGGAAGGACGAAGACGTCACTCGCGTTCTCTTCTGCGGGCCTCATTTCCCC GCGTCGCATAACTACACCAGAGAGTATTTGGCCAAATATCCTTTCATTCAGGTTGATGATGTTCCACTCAGTGAAGTGCCAGATGCCATATCGAAGTACC ACCTGTGCGTGGTGAAGGACATGAAGCTAGATTCAAATGTGCTTTCCAGGGCTAATTTAATGAAGATCGTAATGCAGTATGGTGTTGGGATTGAAGGTGT GGATATCGATGCTGCTACGAAATTCGGGATCAAAGTTGCGAGGATTCCCAGCGATGTAACGGGGAATGCAATTTCGTGCGCTGAGATGAGTATCTATCTG ATGTTAGGTCTTCTCCGCAAGCAGCATGAGCTTCAAGTTTCGGTGCAGCAGAAAAAGCTAGGAGAACCAATTGGTGACACATTATTTGGAAAAACAGTAT TCATATTAGGGTATGGAAACATAGGGATTGATTTGGCTAAGCGACTGAAGCCATTCGGTGTGAGAATCATCGCCACAAAGAGGAGCTGGCTGCTTCATTC TAATGGTAATTCATCATCATCTAATGGTGAGACAGTTCATGATCTGGTGGATGAGAAGGGTAGTCACGAACAGATCCACGAGTTTGCTAGCAAGGCAGAC ATTATTGTTTGCTGCTTGTGTATGAACAAGGAGACGGTCGGTATAGTGAACGCATCGTTCTTATCTTCAATGAGAAAGGGTTCCCTACTGGTAAACATTG CTCGAGGCGGTTTGCTAGACTACTCAGCAGTTTTCGAGCACCTTAAGTCAGGACACCTCGGTGGCTTGGGCATCGATGTCGCCTGGACCGAGCCATTTGA TCCTAACGATCCGATTCTGAAGTTCGACAACGTGATAATCACTCCTCATGTAGCAGGTGTTACAGAACACTCCTACAGATCCATGGCTAAGCATGAGCTT CAAGTTTCGGTGCAGCAGAAAAAGCTAGGAGAACCAATTGGTGACACATTATTTGGAAAAACAGTATTCATATTAGGGTATGGAAACATAGGGATTGATT TGGCTAAGCGACTGAAGCCATTCGGTGTGAGAATCATCGCCACAAAGAGGAGCTGGCTGCTTCATTCTAATGGTAATTCAGCATCATCTACTGGTAAGAC AGTTCATGATCTGGTGGATGAGAAGGGTAGTCACGAACAGATCCACGAGTTTGCTAGCAAGGCAGACATTATTGTTTGCTGCTTGTGTATGAACAAGGAG ACGGTCGGTATAGTGAACGCATCGTTCTTATCTTCAATGAGAAAGGGTTCCCTACTGGTAAACATTGCTCGAGGCGGTTTGCTAGACTACTCAGCAGTTT TCGAGCACCTTAAGTCAGGACACCTCGGTGGCTTGGGCATCGATGTCGCCTGGACCGAGCCATTTGATCCTAACGATCCGATTCTGAAGTTCGACAACGT GATAATCACTCCTCATGTAGCAGGTGTTACAGAACACTCCTACAGATCCATGGCTAAGGTTGTTGGAGATCTTGCCCTTCAACTCCACAAAGGCGATTCT CTTACGGGCATAGAGTGCGTAAACTGA
AA sequence Show only first row Show all	>Lus10009456 pacid=23149713 polypeptide=Lus10009456 locus=Lus10009456.g ID=Lus10009456.BGIv1.0 annot-version=v1.0 MYGQNLRRALQNQPAPSPASHPAPSVPAASSLSVPSQVKYHRIPFHHFLSFCCSIAYLRFSLTDSPASATIRKKEDLSMVGVGGKDEDVTRVLFCGPHFP ASHNYTREYLAKYPFIQVDDVPLSEVPDAISKYHLCVVKDMKLDSNVLSRANLMKIVMQYGVGIEGVDIDAATKFGIKVARIPSDVTGNAISCAEMSIYL MLGLLRKQHELQVSVQQKKLGEPIGDTLFGKTVFILGYGNIGIDLAKRLKPFGVRIIATKRSWLLHSNGNSSSSNGETVHDLVDEKGSHEQIHEFASKAD IIVCCLCMNKETVGIVNASFLSSMRKGSLLVNIARGGLLDYSAVFEHLKSGHLGGLGIDVAWTEPFDPNDPILKFDNVIITPHVAGVTEHSYRSMAKHEL QVSVQQKKLGEPIGDTLFGKTVFILGYGNIGIDLAKRLKPFGVRIIATKRSWLLHSNGNSASSTGKTVHDLVDEKGSHEQIHEFASKADIIVCCLCMNKE TVGIVNASFLSSMRKGSLLVNIARGGLLDYSAVFEHLKSGHLGGLGIDVAWTEPFDPNDPILKFDNVIITPHVAGVTEHSYRSMAKVVGDLALQLHKGDS LTGIECVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72190			D-isomer specific 2-hydroxyaci...		Lus10009456 [exp]	0	1
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10017343 [exp]	6.5	0.6480
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	7.7	0.6960
AT5G02440			unknown protein		Lus10016560 [exp]	8.1	0.6254
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	9.9	0.5861
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	53.7	0.5517
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10020227 [exp]	63.4	0.5211
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10018974 [exp]	71.6	0.4423
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	81.3	0.5228
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10016489 [exp]	103.7	0.5030

Compare expression of checked genes

Lus10009456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.