Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 209 / 7e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 161 / 3e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 159 / 1e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 158 / 4e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 154 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 148 / 3e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 145 / 6e-43 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 141 / 2e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 134 / 6e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 114 / 5e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009455 [exp] 297 / 2e-103 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10001540 [exp] 286 / 2e-99 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10016929 [exp] 246 / 5e-82 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002777 [exp] 159 / 4e-48 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 157 / 2e-47 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 153 / 1e-46 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 151 / 2e-45 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 148 / 5e-44 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 147 / 1e-43 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102500 [exp] 220 / 4e-72 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 218 / 2e-71 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 157 / 9e-48 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 157 / 1e-47 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 151 / 2e-45 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 143 / 4e-42 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 121 / 9e-34 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 114 / 3e-31 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 112 / 1e-30 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 111 / 5e-30 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10009457 pacid=23149699 polypeptide=Lus10009457 locus=Lus10009457.g ID=Lus10009457.BGIv1.0 annot-version=v1.0 ATGGGCTGCATCCCCAGCATTTTGGCCCAAAACCCAGCTGGACGTTGCTCTGAGCAAGTAAACAATCTCATTACTCCCTTCAACCAAAATGTGAAGGCAA TGATCAACCACTTGAACTCCAACCTACCCGGCGCAAGGTTCGTCTACATCGACATTCATCGAATGTTCAGCGACATGATCGCTAACTCGAGAAACTACGG GTTTAAGGTGACGAATAGAGGCTGCTGCGGGGTTGGGAGGAATGCCGGACAGATAACGTGCTTACCGTTCCAGACACCATGTAGAAACCGGGCCCAGTAC ATTTTTTGGGACGCGTTCCACCCGACCGAGGCGGTGAATGTGATGATGGGGAAGAAAGCTTTCGCTGGAGACATGAGCTATGTTTACCCTATCAATATCG AGCAGCTTGCTCGAATTGGATGA
AA sequence Show only first row Show all	>Lus10009457 pacid=23149699 polypeptide=Lus10009457 locus=Lus10009457.g ID=Lus10009457.BGIv1.0 annot-version=v1.0 MGCIPSILAQNPAGRCSEQVNNLITPFNQNVKAMINHLNSNLPGARFVYIDIHRMFSDMIANSRNYGFKVTNRGCCGVGRNAGQITCLPFQTPCRNRAQY IFWDAFHPTEAVNVMMGKKAFAGDMSYVYPINIEQLARIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009457 [exp]	0	1
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	4.1	0.9872
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	4.5	0.9858
					Lus10007549 [exp]	5.7	0.9833
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	8.1	0.9824
					Lus10015654 [exp]	9.2	0.9805
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	9.8	0.9826
					Lus10016534 [exp]	11.2	0.9798
					Lus10026293 [exp]	12.0	0.9823
AT5G01660			unknown protein		Lus10018307 [exp]	12.4	0.9792
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	13.8	0.9794

Compare expression of checked genes

Lus10009457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.