Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 274 / 4e-87 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 270 / 9e-84 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 170 / 4e-47 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72150 162 / 4e-44 PATL1 PATELLIN 1 (.1) AT1G22530 159 / 9e-43 PATL2 PATELLIN 2 (.1) AT3G51670 146 / 2e-39 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001539 [exp] 370 / 5e-127 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 203 / 5e-62 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001542 [exp] 204 / 5e-60 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 162 / 2e-44 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 147 / 1e-41 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031752 [exp] 152 / 3e-40 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 139 / 9e-37 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 136 / 3e-36 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10003552 [exp] 119 / 3e-29 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079300 [exp] 297 / 5e-95 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 290 / 2e-92 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 216 / 1e-63 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 213 / 1e-62 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 196 / 1e-56 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 196 / 2e-56 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 189 / 1e-53 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 171 / 8e-48 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 140 / 3e-37 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 132 / 6e-34 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10009458 pacid=23149717 polypeptide=Lus10009458 locus=Lus10009458.g ID=Lus10009458.BGIv1.0 annot-version=v1.0 ATGGCCGACGAACCTCCTCCCTCCATCGCTTCACCGCTGCCATCTTCAACTCCTCCTCCTCCTCCTCCTCAATCAGATACTGAAGAGCTTCCAGTAGTAT TAGTACTCCCACCACCGCCGCCGCCAGAGCAAACACCAGCCGCCGAGGTTTCTCCGGACGAGCCATCCGCCGCAGCGCCCCCAGAGCAAACACCAGCCGC CGAGGTCTCCCCCGACGACTCATCCGCCGCAGAGCCGCCGACGTCGGCGGTAAAGGTGGCTTCTTCCAGTAAGAGTAAGTCGGTACTGGAAATGATGGAG AAAGAAGAGGCTGCTGCTGCTACGGATGTTAAGTCTGTTAAGTCTGTGGTTATCAGGGAGGAGCTCGCCGCCGGCGATTCCGATGATAAGCTTGTGAGGG GTAATAATGTTCCACCTCAGTCTCTGGTTTCGTTCAAGGAAGAGAGCAATCGAGTGACCGATCTGTCTGATTCGGAAAGGAAGGCTCTTGACGACCACGG CGGCGGCGGCGGAGGTTTCGATTTGGGGGATACCGCTGCTGAAAGACGACAGAAGCGACGTCGTACTGCTGAAGTTCCTGAGGGCACGGGATTTCAAAGT GAAAGAAGCTCTTACAATGCTGAAGAACACTATCCGGTGGAGGAAAGAGTTCCGAATCGACGAGCTGGTAGAGGAGGAAGATCTTCTAGGCGACGATCTG GAGAAGGTGATGTTCATGCACGGCCACGATCGAGACTGCCATCCGGTGTGTTACAACGTCAGGTGTTCATTAACGTTCCATGGTGGTATTATGCATTCTA CACAATGATGAGTCCATTCATGACCCAGAGAACCAAGAGCAAGTTCGTATTCGCCAGCCCGGCCAGATCGCCAGAAACTCTGTTCAAATACATACCACCT GAAGAAGTACCGATCCAGTACGGTGGAATGAGCGTCGAAGACTGCGATTGCAACCCCGATAAATTCGCCTTCTCCGATCCCGTCACAGACATCGTCGTGA ACTCGGGCACCAAGCAAACCGTTGAGATCATAATTTATGAGAAATGTGTGTTCATATGGGAGGTCCGAGTAGTGGGATGGGAAGTGAGCTACGGTGCTGA ATTCGTCCCCGATCAGAAGGACTCGTACACGGTTATAATCCAGAAACCGACCAAGATGACTCCGATGAGTGAGCCGGTGGTGTCGAGCAAGTTCAAGGTG AGTGAACTGGGGAAGATACTGCTCACGATCGACAACCCGACGACGAAGAAGAAGAGGCTTCTTTACAGGTTCAAGATCATCCCCCTAAGTGCCTGA
AA sequence Show only first row Show all	>Lus10009458 pacid=23149717 polypeptide=Lus10009458 locus=Lus10009458.g ID=Lus10009458.BGIv1.0 annot-version=v1.0 MADEPPPSIASPLPSSTPPPPPPQSDTEELPVVLVLPPPPPPEQTPAAEVSPDEPSAAAPPEQTPAAEVSPDDSSAAEPPTSAVKVASSSKSKSVLEMME KEEAAAATDVKSVKSVVIREELAAGDSDDKLVRGNNVPPQSLVSFKEESNRVTDLSDSERKALDDHGGGGGGFDLGDTAAERRQKRRRTAEVPEGTGFQS ERSSYNAEEHYPVEERVPNRRAGRGGRSSRRRSGEGDVHARPRSRLPSGVLQRQVFINVPWWYYAFYTMMSPFMTQRTKSKFVFASPARSPETLFKYIPP EEVPIQYGGMSVEDCDCNPDKFAFSDPVTDIVVNSGTKQTVEIIIYEKCVFIWEVRVVGWEVSYGAEFVPDQKDSYTVIIQKPTKMTPMSEPVVSSKFKV SELGKILLTIDNPTTKKKRLLYRFKIIPLSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	0	1
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	1.0	0.9096
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	2.8	0.8949
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	3.2	0.8949
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	4.2	0.9060
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	6.2	0.8965
AT5G59350			unknown protein		Lus10040302 [exp]	7.7	0.8448
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	8.5	0.8404
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	8.8	0.8751
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	9.5	0.8722
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	9.6	0.8318

Compare expression of checked genes

Lus10009458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.