Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22610 493 / 1e-168 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 429 / 2e-146 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 427 / 4e-146 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 426 / 1e-145 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 407 / 8e-138 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 412 / 2e-137 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 391 / 3e-129 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 360 / 9e-118 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 354 / 2e-115 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G74720 332 / 3e-106 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001538 [exp] 546 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 433 / 7e-148 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 432 / 1e-147 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 420 / 8e-143 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 418 / 6e-142 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 407 / 6e-141 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 415 / 1e-138 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 400 / 9e-133 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000164 [exp] 311 / 1e-106 AT1G04150 425 / 7e-142 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107700 [exp] 491 / 5e-168 AT1G22610 1414 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 491 / 7e-168 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 424 / 8e-145 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 419 / 2e-142 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 418 / 2e-142 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 416 / 3e-141 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 420 / 1e-140 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 420 / 1e-140 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 414 / 3e-140 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 419 / 7e-140 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10009459 pacid=23149729 polypeptide=Lus10009459 locus=Lus10009459.g ID=Lus10009459.BGIv1.0 annot-version=v1.0 ATGGTGGCACAATACAGCAGACCATTACTCCCCAAGATGCATTATGCACATCCAATCCCCGTTCGTCACATCGACTGGCTAAGACACCAAGCTATGCAGA TCGTCGCTACAAGACTCGCCAGAGCAGAACCGCCCTTGAGACGAGAAGTGGTCGAGTACATGTTGGACGTTGATTACCATATGTGGAGTTTACGACGAAG CAAAGCGAACTTCCATCGTATAATGTCGGTATTATCAACCGTAACAGGAGCTTTCAAGTGGTTCAACGAAATCTGTTACTGGAGAAACCCGATAACGACA TGTTTGGTTCATATCCTGTTCTTGATCCTTGTTTGCTACCCTGAACTTGTCCTGCCTACTGTCTTTCTGTACTTATTCGTGATCGGGTTATGGAACTACC GGTTTCGTCCCAGGCATCCTCCGCATATGGACATAAGGCTGTCACAAGCGGAACATGTTCATCCGGACGAGCTGGATGAAGAATTCGATTCGTTTCCAAC TTCTAGACCGGCGGATATTGTGAGGATGAGGTATGACAGGCTGAGGAGTGTTGCAGGGAGGGTTCAGACTGTGATTGGGGATCTTGCGAGCCAGGGGGAG AGAGCTCACGCCATACTAAGTTGGAGAGATCCGAGGGCTACTGCGATCTTTATCGTGTTTGCGCTTGTTTCTGCTGTGTTTATCTATGTCACGCCGTTCC AGGTTGTGGCGGTTCTTGTTGGTGTATTCATGCTTCGACATCCCAGGTTCCGGAGCCGGATGCCTTCTGTCCCAGTCAACTTCTTCAAGAGATTGCCCGC GAAATCCGATCTGTTGCTATGA
AA sequence Show only first row Show all	>Lus10009459 pacid=23149729 polypeptide=Lus10009459 locus=Lus10009459.g ID=Lus10009459.BGIv1.0 annot-version=v1.0 MVAQYSRPLLPKMHYAHPIPVRHIDWLRHQAMQIVATRLARAEPPLRREVVEYMLDVDYHMWSLRRSKANFHRIMSVLSTVTGAFKWFNEICYWRNPITT CLVHILFLILVCYPELVLPTVFLYLFVIGLWNYRFRPRHPPHMDIRLSQAEHVHPDELDEEFDSFPTSRPADIVRMRYDRLRSVAGRVQTVIGDLASQGE RAHAILSWRDPRATAIFIVFALVSAVFIYVTPFQVVAVLVGVFMLRHPRFRSRMPSVPVNFFKRLPAKSDLLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	0	1
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	2.0	0.9437
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	2.8	0.9490
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	3.5	0.9507
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	3.9	0.9180
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	4.5	0.9224
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	4.9	0.9268
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	5.7	0.9484
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	5.7	0.9012
AT5G03110			unknown protein		Lus10026490 [exp]	5.7	0.9238
AT2G33850			unknown protein		Lus10018650 [exp]	7.7	0.9099

Compare expression of checked genes

Lus10009459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.