Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22610 484 / 2e-159 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 376 / 1e-120 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 360 / 2e-114 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 356 / 6e-113 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 352 / 5e-109 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 318 / 3e-98 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 310 / 8e-94 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 311 / 9e-94 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 292 / 7e-87 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G20080 277 / 5e-83 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001538 [exp] 1026 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 382 / 1e-123 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10031816 [exp] 372 / 4e-123 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 369 / 2e-117 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 367 / 5e-117 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 350 / 3e-108 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 334 / 2e-102 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 328 / 4e-102 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 328 / 1e-101 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107700 [exp] 528 / 3e-176 AT1G22610 1414 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 518 / 1e-172 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 375 / 6e-120 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 375 / 6e-120 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 374 / 9e-120 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 369 / 6e-118 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 366 / 1e-116 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 359 / 1e-111 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 355 / 2e-110 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 348 / 8e-108 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10009460 pacid=23149705 polypeptide=Lus10009460 locus=Lus10009460.g ID=Lus10009460.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCTAAGCTAGTGGTGGAGGTAATCGACGCCGTCGACCTAATGCCGAAAGACGGCCAAGGCTCAGCGAGCCCATATGTTGAGGTGGAATTCA ACGGCACAAAGCTAAGAACTTCGACAAAGACCAAAGACCTCAACCCGCAGTGGAACGAGAAGCTTGTCTTCAAGCTGAGCAACGACGACGCCAGAGATCT ACCTAACTCCACCATTCAAGTAGTTGTCTATAACCATGGAAACGACGTCGTACCACCTAAGAACTTCCTCGGCAGAGTCAGAATCTCTGGCTCCTCTGTC GTTTTCTCTGATGAAGGTGAATCGGTTGGTGCTCAGCCTTACCCGCTTGATAAACGTGGGCTTTTTTCTCATATCAAGGGTGAGATTCTGCTGAAAGTCT ATGCTTTTGTCGGGAATCGCCGCCGGAGGGCGGCGACGGCTGCTGAAGTTGAGATCGACCCGGGTTCAAATTCGGATTCGGTTGAAGAAGATGAATTTCG TCGTAATCAGGATAATCATGAACACGGTGAGATGAAGGAGGAGAAGAAACACAAGGAGAAGGATAAAGTTCGCACCTTTCACTCAATTGGCGGCGGCGGC GGAGGAGGGTTTGAAGAAACCGACCGGAATTCGAATTTGAATTCGAATTCAGCTGAAGAAGAAGAGTTTCATCATAATCGGCATAATCATGAACATGGCG AGGTGAAGGAGAAGAAGAAACACAAGGAGAAGGATAAAGTTCGTACCTTTCACTCAATTGGCCACAACCAGATAACGTTGGACCTTAGTGGATGTCCAAA ACTCAAGTGTCTTCCGCGGTACGGCGGTGGCGGCGGGTTTGAAACGCAGTATCATGTGATGAGGGATACAACGCCGGTGGTGGATACAAGAACGAGCTAC GCAAGAGCTGCAACACCAGTAGCGAGCTCAGTGATGCATCATATGCATATGCCGAAGCAGAATCCGGAGTTCTTGCTAGTGGAGACGAGTCCGCCATTGG CAGCTAGGATGAGGTACAACAAAGGAGGAGACAAGACGTCGAGCACTTACGATTTAGTCGAAAAAATGCATTTCCTGTATGTCAGCGTTGTAAAGTGCAG AGATCTTCCTGTAATGGATGTCACAGGGAGTTTAGATCCTTATGTGGAAGTGAAGTTAGGGAACTACAAGGGGATGACAAAGCATCATGAAAAGAATCAG AATCCGACATGGCATCAGATTTTCGCCTTTTCGAAGGAGCGGTTACAGTCGAATTTGCTGGAAGTTATTGTGAAAGATAAGGATTTTGCTAAGGATGATT TCGTCGGGAGGGTGAACTTCGATCTGACCGAGGTTCCTGTTCGAGTTCCACCGGATAGTCCGTTGGCTCCACAATGGTATAGGCTGGAGGATAAGAAAGG TTACAAAGGGAGAGGTGGAGAGATCGTGCTTGCTGTATGGATGGGGACACAAGCTGATGAAGCATTTCCTGAAGCTTGGCATAGTGATGCTCATGATATT GGTCATATAAACCTGGCGAATACGAGATCGAAGGTATATTTCTCGCCGAAGCTGTATTATTTACGAGTTAAAGTGTTTGAGGCTCAGGATTTAGTACCTT ACGACAGAAGTCGAGTTCCCGACACGTATGTGAAAGTCGTGTTGGGGAGTCAAGGGAGAAACACTAGACCTTCTCAGATGAGGACTGTGAATCCGATTTG GGGGGAAGAGCTAATGTACGTTGCTTCCGAGCCATTCGAGGAATTTATCATCGTTTCAGTTGAGGATAGAGTTGGGCCGGGGAGAGATGAGACATTGGGG AGGGTTGTTGTGTCGTTTCGAGATGTTCCTCAGAGATTGGAAACCAGTAAGATGCCCGAACCGAGGTGGTTCAATCTGATGAGGCCGTCGTATGGCGACG AGGATGTAGGAATTTGCTGCCGATGA
AA sequence Show only first row Show all	>Lus10009460 pacid=23149705 polypeptide=Lus10009460 locus=Lus10009460.g ID=Lus10009460.BGIv1.0 annot-version=v1.0 MAGAKLVVEVIDAVDLMPKDGQGSASPYVEVEFNGTKLRTSTKTKDLNPQWNEKLVFKLSNDDARDLPNSTIQVVVYNHGNDVVPPKNFLGRVRISGSSV VFSDEGESVGAQPYPLDKRGLFSHIKGEILLKVYAFVGNRRRRAATAAEVEIDPGSNSDSVEEDEFRRNQDNHEHGEMKEEKKHKEKDKVRTFHSIGGGG GGGFEETDRNSNLNSNSAEEEEFHHNRHNHEHGEVKEKKKHKEKDKVRTFHSIGHNQITLDLSGCPKLKCLPRYGGGGGFETQYHVMRDTTPVVDTRTSY ARAATPVASSVMHHMHMPKQNPEFLLVETSPPLAARMRYNKGGDKTSSTYDLVEKMHFLYVSVVKCRDLPVMDVTGSLDPYVEVKLGNYKGMTKHHEKNQ NPTWHQIFAFSKERLQSNLLEVIVKDKDFAKDDFVGRVNFDLTEVPVRVPPDSPLAPQWYRLEDKKGYKGRGGEIVLAVWMGTQADEAFPEAWHSDAHDI GHINLANTRSKVYFSPKLYYLRVKVFEAQDLVPYDRSRVPDTYVKVVLGSQGRNTRPSQMRTVNPIWGEELMYVASEPFEEFIIVSVEDRVGPGRDETLG RVVVSFRDVPQRLETSKMPEPRWFNLMRPSYGDEDVGICCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	0	1
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	3.6	0.9230
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	4.2	0.9186
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	4.5	0.9052
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	5.5	0.9177
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	5.7	0.8946
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	6.2	0.8861
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	6.5	0.8793
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	6.5	0.8614
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	9.1	0.8652
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	9.2	0.9086

Compare expression of checked genes

Lus10009460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.