Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001289 [exp] 143 / 8e-44 AT1G35430 40 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009461 pacid=23149745 polypeptide=Lus10009461 locus=Lus10009461.g ID=Lus10009461.BGIv1.0 annot-version=v1.0 ATGGCGCCTTCGTTCTCCTTCTTCACGCGAATCTCTTTTCCTCGCCGTCATGAACAAATCCGATCTCCGCCGCCGTCGATTCCAACCGAATCCATGGCGA TCCCAACTCGAATCCGATGCCTACTCATCCTCCTCTTCTCCCCCTTAATCCTCCCCTTACTCTTCCTAACTTTCCCCTTGGTATTCGCGCTGGGGCTCTG CCTCTGGATCCGATTCTGCTGTCGGAGACGGAATCGACAGCGGCGGAGGCGACGTCTGGTCGGGAAGAAGAAATCGGCGCATAAGGAGGAGGAGGAGGAA TCAGCGGCCGCTGAGCTGCGGCGGTGCGAGGAAGGGCTGAAGGAAGCAGAGGATGAAGAGGAGGACGGTGAAATTGGACGGCTACTTCAGGTTTACTTGG AAGATCAGCTGCGGCTCGCGAAGTCGATTGTTTCCGGCGATAAGACTGAGAGCAGCGGCGTCGGCGGCGGTGGAATTCGGAGTCGCCGAGACGACGTCGA TTCCAAAACTGTCCCTCTGTTGACCTAA
AA sequence Show only first row Show all	>Lus10009461 pacid=23149745 polypeptide=Lus10009461 locus=Lus10009461.g ID=Lus10009461.BGIv1.0 annot-version=v1.0 MAPSFSFFTRISFPRRHEQIRSPPPSIPTESMAIPTRIRCLLILLFSPLILPLLFLTFPLVFALGLCLWIRFCCRRRNRQRRRRRLVGKKKSAHKEEEEE SAAAELRRCEEGLKEAEDEEEDGEIGRLLQVYLEDQLRLAKSIVSGDKTESSGVGGGGIRSRRDDVDSKTVPLLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35430			unknown protein		Lus10009461 [exp]	0	1
AT3G61200			Thioesterase superfamily prote...		Lus10018847 [exp]	13.3	0.8456
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	44.5	0.8271
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	45.8	0.8199
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	54.3	0.7988
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10021960 [exp]	61.4	0.8021
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	84.7	0.8120
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	182.7	0.7841
AT5G06130			chaperone protein dnaJ-related...		Lus10014223 [exp]	288.9	0.7653

Compare expression of checked genes

Lus10009461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.