Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 550 / 0 Major facilitator superfamily protein (.1) AT1G72125 536 / 0 Major facilitator superfamily protein (.1) AT1G72120 535 / 0 Major facilitator superfamily protein (.1) AT1G22570 506 / 9e-175 Major facilitator superfamily protein (.1) AT1G72140 503 / 1e-173 Major facilitator superfamily protein (.1) AT1G22550 503 / 1e-173 Major facilitator superfamily protein (.1) AT1G72130 491 / 3e-169 Major facilitator superfamily protein (.1.2) AT3G54450 420 / 3e-141 Major facilitator superfamily protein (.1) AT2G37900 398 / 1e-132 Major facilitator superfamily protein (.1) AT3G53960 395 / 3e-131 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 526 / 1e-179 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 497 / 4e-171 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 429 / 9e-145 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 427 / 9e-144 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10034206 [exp] 381 / 2e-125 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10011786 [exp] 378 / 3e-124 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024340 [exp] 377 / 7e-124 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10023743 [exp] 376 / 1e-123 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10000670 [exp] 366 / 4e-120 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079700 [exp] 593 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 576 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 572 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 564 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 552 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 546 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 543 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 527 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 515 / 2e-178 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 430 / 5e-145 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10009462 pacid=23149708 polypeptide=Lus10009462 locus=Lus10009462.g ID=Lus10009462.BGIv1.0 annot-version=v1.0 ATGGCGGAAACTTCCTCCGCCGCCGGAGTTCCTTTGCTGGACGACAGAGAAGTTGCTGGAACCATCGATCACCGCGGCAAACCAGCTCTCCGCTCATCCT CCGGCGGATGGAGATCTGCTGCTTTCATCATAGTGGTGGAAGTGGCGGAGAGATTTGCCTACTTCGGGATATCGGCTAACCTGATCACTTACCTGACCGG CCCACTCGGCCAAAAGACGGCCGCGGCGGCGTCCAATGTGAACGCCTGGGCGGGGACTGGTACGTTGTTGCCTGTGGTCGGAGCTATCGTCGCTGATTCT TTCCTGGGCCGGTACAAGACGATCATTGTTGCATCTGTCATTTACACTGTGGGATTAGGGCTAATGACATTATCAGCTGCACTAACATCTGAATCCATCA CCAACTGTCAACACACCATACTTTTCTTCATGTCCCTGTACATGGTAGCAATAGGGCAAGGAGGGCACAAGCCTTGCGTGCAGGCCTTCGGAGCTGACCA ATTCGACGAGCACAACTCGAAAGAGATCGAGCAAAGATCGTCGTTCTTCAACTGGTGGTACTGTAGCATGGCGATCGGGATCAACGTGGCACTTCTTGTA GTGGTCTACGTCCAAGACAACTTGAATTGGGCTGTTGGGTTTGCAATCCCTTTCTTCACCATGCTTGCTAGTCTTGTCACTTTCTTGCTTGGCAGGACGA CTTACAGGTTCAGCATCAACGGGAAGGAGGACGTAAACCCATTTCTCAGAATCGGTCGGGTGTTTGCTCGAGCTATTCGAAACCGTGGAAGAAGTAGTAA GGTTTCAGGCATGGTAAATAGTGAAGAAGGAGAAGCTTACCTGCTTTCAAATCACAGCTCACAGCAATTTAGGTTCCTGAATGGGGCGTTGTTCGAGCCG AGACATGGTTCCTCCATGGAGGAAGATCAAGAAGGATCACGACTACTAATGGAGGTTTGCAGTGTGAGTGATGTTGAAGAGACCAAGCAAATGTTGAGGC TGGTCCCGATATGGGTTTCCTCCTTAGGATATGCCGTCGTTTTCGCACAAGTCGCAACGTTCTTCACAAAGCAAGGCTCTACCCTTGACAGAACCATCTT CCCAAACTTCCAAATCCCACCAGCTTCCCTTCAGTTCTTCATAGGCACTGCCATCATCATCTTCATCCCTGTCTACGACCGCCTCTTCGTCCCCATCATG GCATCCATAACAGGCAACCCCCGTGGGATCACGATGCTACAGAGGATAGGAACGGGGATGTTCCTATCCCTCCTCTCCATGGCCATTGCTGCCACGGTCG AGACCAAGAGACTCAAGACCGAACACAACAAGCAACCAACAATGAGCATATGGTGGCTGGTTCCTCAGTATATAGTCTGCGGGGTTTCAGACGTTTTCGC CATTGTCGGGCTCCAGGAGTTCTTCTACCAAGAGGTACCGAACGAGCTCAAGAGCTTGGGACTGTCGTTTTACCTCGGCGTGCTGGGAGTTGGCAGCTTT CTGAGTAGCTTCATTGTCTCTCTGGTTGATCGGATAACTTCAGGTGGTGGAAGTTGGTTCGATGATGATCTGAATAAGGCGCATCTTGATTACTTCTACT GGCTTCTTGCTCTTCTTAGTGGCCTTTGGTTGGTTGGTTTCTTGTGGTTTGGTAGAGCTTATGTTTACAGGCAGAAATAG
AA sequence Show only first row Show all	>Lus10009462 pacid=23149708 polypeptide=Lus10009462 locus=Lus10009462.g ID=Lus10009462.BGIv1.0 annot-version=v1.0 MAETSSAAGVPLLDDREVAGTIDHRGKPALRSSSGGWRSAAFIIVVEVAERFAYFGISANLITYLTGPLGQKTAAAASNVNAWAGTGTLLPVVGAIVADS FLGRYKTIIVASVIYTVGLGLMTLSAALTSESITNCQHTILFFMSLYMVAIGQGGHKPCVQAFGADQFDEHNSKEIEQRSSFFNWWYCSMAIGINVALLV VVYVQDNLNWAVGFAIPFFTMLASLVTFLLGRTTYRFSINGKEDVNPFLRIGRVFARAIRNRGRSSKVSGMVNSEEGEAYLLSNHSSQQFRFLNGALFEP RHGSSMEEDQEGSRLLMEVCSVSDVEETKQMLRLVPIWVSSLGYAVVFAQVATFFTKQGSTLDRTIFPNFQIPPASLQFFIGTAIIIFIPVYDRLFVPIM ASITGNPRGITMLQRIGTGMFLSLLSMAIAATVETKRLKTEHNKQPTMSIWWLVPQYIVCGVSDVFAIVGLQEFFYQEVPNELKSLGLSFYLGVLGVGSF LSSFIVSLVDRITSGGGSWFDDDLNKAHLDYFYWLLALLSGLWLVGFLWFGRAYVYRQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	0	1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	2.6	0.8053
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	4.0	0.7823
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10027596 [exp]	4.6	0.7833
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	11.6	0.7777
AT5G01970			unknown protein		Lus10031947 [exp]	18.7	0.7840
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	22.2	0.7286
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	22.8	0.7558
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	23.6	0.6944
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	24.5	0.7361
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	27.7	0.7679

Compare expression of checked genes

Lus10009462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.