Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33780 363 / 2e-125 Protein of unknown function (DUF179) (.1) AT3G29240 187 / 1e-56 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT3G19780 71 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001286 [exp] 597 / 0 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1) Lus10005224 [exp] 181 / 1e-54 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030696 [exp] 78 / 1e-17 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030695 [exp] 62 / 9e-12 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10013425 [exp] 60 / 2e-09 AT3G19780 743 / 0.0 unknown protein Lus10040970 [exp] 59 / 4e-09 AT3G19780 500 / 5e-157 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073000 [exp] 387 / 1e-134 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.013G100000 [exp] 374 / 7e-130 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1) Potri.004G125800 [exp] 178 / 2e-53 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Potri.007G070400 [exp] 56 / 3e-08 AT3G19780 770 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10009463 pacid=23149684 polypeptide=Lus10009463 locus=Lus10009463.g ID=Lus10009463.BGIv1.0 annot-version=v1.0 ATGGATCTACTGAGAGTACAAGTGAAGAACACCAACCGGAGCCCTACACTCCTGCCTTTGAACTGCTCGATTTCGGCCAGCTGGCCGAAAGAGAGGAAGA CGACGACGATTGGGTGGCTGGAGATCAAGGTTTTCAACCGGAGCCTCTGCTCTTATCGCTGCCGCTCGTTGACCGTTGTCTCAGCTAAGGCGAAGAAGAA CAACGGCAATAACAATAACGATGATAATAAAGAGAATGAAAGTCGATCTCATCGAGATGGCGAAGTGTTGAAAGGGAAGAAATCATCATCCGATGGCAAC AAACCCAGCAACAGTTCTTCCCAGAAGCCGGTTCGTGCCAGCTCAGACTGGAGGGTGTTTAGGGCAAACTTGGTTGCCAAGGAACAGGCGTACAAGTCTG AGACTTCGACTCTCGAACCGAAGCCACTCGGCCTGAAATGGGCGCATCCCTTATCAGTCCCCGAAAACGGATGCGTCCTCGTTGCCACGGAGAAACTCGA CGGACAACGAACATTCGAGCGAACCGTGGTCCTCCTCTTAAGGTCCGGAACCAGCCATCCGCAGGAAGGACCATTCGGCATCGTCATCAACCGTCCACTG AACAAAAAGATCAAGCACATGAAACCGAACAACAACGAGCTAGCGACAACATTCTCAGACTGTGCTCTTCATTTTGGCGGCCCTCTAGAGGCGAGCATGT TCTTGTTGAAGACAGGAGAGAAGACCAAGCTTCCCGGGTTCGAAGAAGTGGTCCCCGGGTTGTGTTTTGGTGCCAGGAACAGTCTGGATGATGCTGCAGA GCTTGTGAAAAAGGGATTGCTAAAGCCTCAGGATTTTCGATTCTTCGTCGGGTATGCTGGATGGAAGCTTGATCAGTTGAGGGAGGAGATTGAGTCGGAG TTTTGGCATGTTGCTTCGTGTAGCTCGAATCTTATCTGTGGGGGATCTGTACAGTCTGGGAATCTGTGGGAGGAGATTCTGCAACTTATGGGAGGTGACT ACTCCGAGTTGAGCCGGAAGCCTAAGCAAGACATGTAA
AA sequence Show only first row Show all	>Lus10009463 pacid=23149684 polypeptide=Lus10009463 locus=Lus10009463.g ID=Lus10009463.BGIv1.0 annot-version=v1.0 MDLLRVQVKNTNRSPTLLPLNCSISASWPKERKTTTIGWLEIKVFNRSLCSYRCRSLTVVSAKAKKNNGNNNNDDNKENESRSHRDGEVLKGKKSSSDGN KPSNSSSQKPVRASSDWRVFRANLVAKEQAYKSETSTLEPKPLGLKWAHPLSVPENGCVLVATEKLDGQRTFERTVVLLLRSGTSHPQEGPFGIVINRPL NKKIKHMKPNNNELATTFSDCALHFGGPLEASMFLLKTGEKTKLPGFEEVVPGLCFGARNSLDDAAELVKKGLLKPQDFRFFVGYAGWKLDQLREEIESE FWHVASCSSNLICGGSVQSGNLWEEILQLMGGDYSELSRKPKQDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	0	1
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	2.2	0.9327
AT1G03250			unknown protein		Lus10028017 [exp]	3.2	0.9099
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	3.2	0.9275
					Lus10021689 [exp]	6.9	0.9272
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	8.5	0.9107
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	10.4	0.9145
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	11.0	0.9169
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	13.2	0.9132
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	13.7	0.9236
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	17.1	0.8768

Compare expression of checked genes

Lus10009463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.