Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71530 651 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 617 / 0 Protein kinase superfamily protein (.1) AT4G10010 580 / 0 Protein kinase superfamily protein (.1) AT1G53050 573 / 0 Protein kinase superfamily protein (.1) AT1G09600 543 / 0 Protein kinase superfamily protein (.1) AT1G54610 527 / 3e-178 Protein kinase superfamily protein (.1.2.3) AT5G50860 521 / 5e-176 Protein kinase superfamily protein (.1) AT1G57700 523 / 5e-175 Protein kinase superfamily protein (.1) AT5G44290 508 / 6e-170 Protein kinase superfamily protein (.1.2.3.4) AT5G39420 499 / 2e-166 CDC2CAT CDC2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001285 [exp] 1213 / 0 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025773 [exp] 562 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 559 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 559 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10008925 [exp] 555 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 543 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 532 / 2e-180 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 530 / 3e-179 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 533 / 2e-178 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100100 [exp] 704 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 673 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G119400 [exp] 568 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 566 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 566 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 550 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 548 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 547 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 545 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 543 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009464 pacid=23149721 polypeptide=Lus10009464 locus=Lus10009464.g ID=Lus10009464.BGIv1.0 annot-version=v1.0 ATGGGCTGTATATGCTCCAAAGGAGCTAAAGAACCAGACCTAACCCCAACCAATAATAACAAGGATCATAGCAAGACCAATTTGGATGTTCAGCTTGTAG CCCCAACCCAATCAAAGACAGAAGAATTCCTCCACCACCAATCCTCCTACGCCTCGAGCAGGCACGGGTCGAGGCACTATTCGAGGCAGGCCTCGAAGGT CTCCAACCACAACTCTAACCCTGGCAGGATTGGGAAGAACAATGTCTTCATCGTGGAGGAGAACAAGTCCGTCGAGAATGGTAAGCTCATTTCGAAATCG GCTAGGCACCACCAGAGGGGTACCACGATGGACCTTTCAAACAGATTCTATCTCCCTCGTGTCTCGAGGACTTTCAGCATGCCGTGTCATGGAGATGGAG ACATTGACCCCGGTTGGCCTCAATGGCTAACATCGGTTGCTGGTGACGCTGTTCGCGGCTGGCTCCCTCGTCAGGCCTGCTCGTTTGAGAAGCTCGAAAA GATTGGAGAAGGGACTTACAGCACAGTGTACAAAGCCAGAGACCTTCAAACTGGGAAGATTGTTGCAATGAAGAAAGTCAGGTTTGTGAACATGGACCCT GAAAGTGTACGGTTCATGGCAAGGGAGATCAACATCTTGAGAAAACTTGATCATCCAAATGTGATGAAGCTAGAGTGCATCGTCACTTCGAGAATGTCCG AAAGCTTGTACTTAGTCTTCGAGTACATGGACCACGACCTAACTGGCCTCGCAACGAGGCCCGGTACCAAGTTCACAGAACAACAGCTTGTAGCCCCAAC CCAATCAAAGACAGAAGAATTCCTCCACCACCAATCCTCCTACGCCTCGAGCAGGCACGGGTCGAGGCACTATTCGAGGCAGGCCTCGAAGGTCTCCAAC CACAACTCTAACCCTGGCAGGATTGGGAAGAACAATGTCTTCATCGTGGAGGAGAACAAGTCCGTCGAGAATGGTAAGCTCATTTCGAAATCGGCTAGGC ACCACCAGAGGGGTACCACGATGGACCTTTCAAACAGATTCTATCTCCCTCGTGTCTCGAGGACTTTCAGCATGCCGTGTCATGGAGATGGAGACATTGA CCCCGGTTGGCCTCAATGGCTAACATCGGTTGCTGGTGACGCTGTTCGCGGCTGGCTCCCTCGTCAGGCCTGCTCGTTTGAGAAGCTCGAAAAGATTGGA GAAGGGACTTACAGCACAGTGTACAAAGCCAGAGACCTTCAAACTGGGAAGATTGTTGCAATGAAGAAAGTCAGGTTTGTGAACATGGACCCTGAAAGTG TACGGTTCATGGCAAGGGAGATCAACATCTTGAGAAAACTTGATCATCCAAATGTGATGAAGCTAGAGTGCATCGTCACTTCGAGAATGTCCGAAAGCTT GTACTTAGTCTTCGAGTACATGGACCACGACCTAACTGGCCTCGCAACGAGGCCCGGTACCAAGTTCACAGAACAACAGATAAAATGTTACATGCAACAA CTGCTTAGAGGCTTGCAACACTGCCACGAGTGCGGGATCCTGCATCGAGACATCAAGGGATCGAATCTCCTGATCAACGACGACGGAGTTTTGAAGCTCG GGGACTTCGGACTGGCTAACTTCTACCGGGACTCGTCGCAACAGGCCTTGACGAGTCGGGTTGTTACTCTTTGGTACAGGGCACCTGAGCTCTTGCTTGG TGCTACTCAGTATGGAGTTGGGATTGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAACTCTTTGCTGGGAAGCATATCATGCCTGGAAGAACCGAGGTT GAGCAAATGCACAAGATATTCAAGCTATGCGGCTCGCCATCAGAAAAATACTGGCAGAGAACAAAGTTGCCACACGCAACGAGTTTCAAGCCTCAGCAGC CATACCAGCGTTGCGTCAAAGAAGCATTCAAGAACTTCCCACCTTCAGCTTTGGCTCTTGTGGATCAGCTGCTGTCGATCGAGCCTGAAGCTCGAGGAAC AGCCGCTTCTGCTCTCGAAAGCCAGTTCTTCAACACAAAGCCGTATCCTTGTGAGCCTTCAGCTTTGCCAAAGTATCCTCCTAGCAAGGAACTTGATGCC AAGGCCAGAGAAGACGAAGTAAGAAGAAAAATGGCAGAAGCAATGAAAAACAGGGGAGCCGAGTCGGTCAGAGGGCAAAGAACGGAGCGGGAATCACCCG GCAAAGGGGTAGGGAAACCAAGCAACTGCCACAAGTATGAAGATGAATCAGGAGGAGCAACAGGAGGAATGATGATGATGAGGCCAAATGCTGCTGGTGC CGGATACAACCACTCATGTTCAATGATCCACCCTGTTTCGGGCCTAACCAACCGGAACGAGTTCAGAAGCCGAAACAACAGCATCATCAAGGACTCAACA AGGTCTCAACAACAGACAGTTGACATGTCGTTGAACATCAAGGACTCTTCAGTGGTGTATGTTCCACCGAGGAAGAACAGGATAAATTACTCAGGACCAC TGATGCCACCAGGAGGGAACATGGAAGAGCTTCTGAAAGAGCACGAGAGACAAATCCAACAAGCAGTAAGGAAAGCAAGGAGTAAAGATAACCTTAACGG CGGAGGCGAAGACTGTCAGAATCAGCACCAGAACAGCAAATATGGAGGATGA
AA sequence Show only first row Show all	>Lus10009464 pacid=23149721 polypeptide=Lus10009464 locus=Lus10009464.g ID=Lus10009464.BGIv1.0 annot-version=v1.0 MGCICSKGAKEPDLTPTNNNKDHSKTNLDVQLVAPTQSKTEEFLHHQSSYASSRHGSRHYSRQASKVSNHNSNPGRIGKNNVFIVEENKSVENGKLISKS ARHHQRGTTMDLSNRFYLPRVSRTFSMPCHGDGDIDPGWPQWLTSVAGDAVRGWLPRQACSFEKLEKIGEGTYSTVYKARDLQTGKIVAMKKVRFVNMDP ESVRFMAREINILRKLDHPNVMKLECIVTSRMSESLYLVFEYMDHDLTGLATRPGTKFTEQQLVAPTQSKTEEFLHHQSSYASSRHGSRHYSRQASKVSN HNSNPGRIGKNNVFIVEENKSVENGKLISKSARHHQRGTTMDLSNRFYLPRVSRTFSMPCHGDGDIDPGWPQWLTSVAGDAVRGWLPRQACSFEKLEKIG EGTYSTVYKARDLQTGKIVAMKKVRFVNMDPESVRFMAREINILRKLDHPNVMKLECIVTSRMSESLYLVFEYMDHDLTGLATRPGTKFTEQQIKCYMQQ LLRGLQHCHECGILHRDIKGSNLLINDDGVLKLGDFGLANFYRDSSQQALTSRVVTLWYRAPELLLGATQYGVGIDLWSAGCILAELFAGKHIMPGRTEV EQMHKIFKLCGSPSEKYWQRTKLPHATSFKPQQPYQRCVKEAFKNFPPSALALVDQLLSIEPEARGTAASALESQFFNTKPYPCEPSALPKYPPSKELDA KAREDEVRRKMAEAMKNRGAESVRGQRTERESPGKGVGKPSNCHKYEDESGGATGGMMMMRPNAAGAGYNHSCSMIHPVSGLTNRNEFRSRNNSIIKDST RSQQQTVDMSLNIKDSSVVYVPPRKNRINYSGPLMPPGGNMEELLKEHERQIQQAVRKARSKDNLNGGGEDCQNQHQNSKYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	0	1
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	10.8	0.7852
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	12.0	0.7919
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	12.8	0.8034
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	13.0	0.7742
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	17.0	0.7685
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	18.7	0.7464
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10031870 [exp]	19.4	0.7167
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	20.0	0.7464
AT5G42540		AtXRN2, XRN2	exoribonuclease 2 (.1.2)		Lus10009577 [exp]	20.7	0.7342
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	21.4	0.7374

Compare expression of checked genes

Lus10009464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.