Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31840 627 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G19440 294 / 1e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G55840 287 / 4e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 272 / 4e-81 RPF2 rna processing factor 2 (.1) AT1G63400 268 / 6e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 274 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 267 / 4e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 266 / 8e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 265 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 267 / 3e-78 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001284 [exp] 1508 / 0 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 289 / 2e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 281 / 3e-81 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 275 / 5e-78 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 269 / 9e-78 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 268 / 1e-77 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 261 / 1e-74 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 260 / 2e-74 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 258 / 2e-74 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036400 [exp] 862 / 0 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G105400 [exp] 303 / 3e-89 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 295 / 4e-89 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 290 / 9e-88 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 295 / 1e-87 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G050400 [exp] 283 / 3e-85 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 289 / 8e-85 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 278 / 8e-83 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 275 / 3e-82 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 271 / 8e-81 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009465 pacid=23149681 polypeptide=Lus10009465 locus=Lus10009465.g ID=Lus10009465.BGIv1.0 annot-version=v1.0 ATGCTCCTGGACCATACCCTTCTGTCCAAGTTAGAACCCTACCATGTGCAACCCATCCTGTTTTCCCTCCATTCCAAGCCAAATACCGCAATCCAATTCT TCGAATGGGCTGAGAAGTTCCTGAACACGCCCCATTCCCCGCAATCCTTCTGTGCACTTCTCCAAATCTTGCTTCGTCGGAATTTGTTTGGTCCAGCTAC TGAGGTCTTTGACAAGTTGGTTAAACAACATGGGAATGATCACGAAACGTGGTATAAGTTCTGCCAAGGGTTTCAGGATTTCAGTCATGAAGGAGGATCA AGTGTTTTCTATGGATTCTTTATTGAGAACTTTTATCGAAAAAGGATGGTTGATACAGCTGTTCAGGTATTCGTGTATATATGCAGAAAGCGGATTTATG TATCGCCTGAAGTCGTATGGGGACTGTTGGATTCCTTGCTCGAGTTGCAAGTTGTGGATAAAATTGTAGATCATTATGATGATTTTTGTACATTGACAAA TGGGGATTCGTCTAGCTTCTATAGATTGGTTATGGAAAGGATTATCCGAAAGGGTGAAGCTAACTTGGCCTTGGGTTTGAAACTTCACAGGTTGCTACTT CAGAAGGGGTTCACTGTAGATATTGTTACATGTAACAAAGTTTTGAAATCCTTTTGCTTGCAGAATAAGGCAGGAATCTCTGACGATTACTTTAACGAAC TGATCTCGGTTGGTCCAGAGCCGAACGTGATCACATTCAGTACATTGATTAACAAATGCTGCAAACAGGGAAATCTGGATAAAGCATTTCAGCTTTATGA TGCAATGGCGGTTAGGGGCCTGGCTGCTGACTTAATTGTGTATAGTATTCTTATCGACGGTCTTTTCAAGGCAGGGAAACTGGTTGAAGGAAACAAACTT CTATCCGAGGCTTTGGATCGTGACATCAAATTGGATGTCGTCGTCTTCAGCTCGGTGATGGATGCGTATGTGAAAGCTGGGGACTTGGAGAAGGCGGTTG AGGTGTATCGAACAATGCTCAAGGAAAAGATTTCGATTTCTCCGAATCTGGTTAGTTACAGTATTCTTATAAAGGGATTGTGTCACAATAATAGAACCCT TGAGGCTTCCGGTGTTTTTGGGAAGATGGTGAAGCATGGGTTCAAGCCTTCTGTGTCAAGTTACTGCAGCTTGATCGACGGACTATGCAAATTGGGGAAC CTAGTCGATAGCTTCCAGTTTTACATGGATATGAAGAAGCATGGCCATGAACCTGATGATGTTGTTTGTAATGTACTAATCAATGGCCTGTGTAAACAAG GGTTGATGAACAGTGCCTTACGGTTCTTCTTTCGAGCGCTGGAAGGAGGCTTGAAACCCAATGTCTTAATCCTGAACACGTTGATCGACGGGTTTTGCAG GCTGAGATGCATGGCTGGTGCAGTGAAAGTGTATAGATTGATTGAAATCGTAGGTTTGAAGCCCGATGTTGTCACCTATACCTTACTCATAAAAGCAGCA TCTAATGTACACCAGTTGGACATGGCATTGTTGATGTATTTCCAGATGCTGAAGAAGGGTTTGGAGCCGGATGCGGTTACTTACTGCACACTCATTGATG GACTCGCCAAGCTTAACAATCCATTGGCCGGGTTAAAGATTTTCGCCCTGATGAACCGGACTGGTATGGTACCGGACATCGCAATCTACAATGTACTTAT CAACATACATATCAGGCAGAGCCAATTGAACGAGGCAGTGCGGCTCTTCGAGCGACTTCAACTCAGAGGACCGAACCCTGACACCATAACCTACAACACG TTGCTTGCCGGTTACTCCTCGTATCGAAAGCTAGACAATGCAGTCAAACTTTTCGAGCAAATGTCCGCACCGAATGCCATCACGTTCACCATACTGATTC ATGCCTTCGCCAGAGAAGGTAGGCTCGAGGAAGCGATGTCCATATTCACCGAGATGTTGGAACGGGGTCCTTACCCTAATAAGGTGACCTACAGCTGTCT CATCGACGGCTACTTCAAAGCTCAAGACATGGATGGTGCGTTCGAGCTCTACAAGGAGATGCTCGAGAACAAGGTTTCGCCCAACATTCTGAGCTATAGT ATGATCATAGACGGCCTCTGCAAGAGGGGTCTGGTCGAGGAAGCTTCGTGCGTGTTTCGATTTGCCTTGGAGAAGAATCTTTTGCCTGATGTGGTGACTT ATACCATTCTCATTCGAGGTTATTGCAAGGTTGGGAAGGTTAAAAAAGCCATGGCAGTTTATGGACAGATGGTGATGAGTGGAATCAGACCGGACCTGTT CTTGCTGAGAACCCTTGATGAGTATCTCCTTGCCAATTCAGAGAGATCATAG
AA sequence Show only first row Show all	>Lus10009465 pacid=23149681 polypeptide=Lus10009465 locus=Lus10009465.g ID=Lus10009465.BGIv1.0 annot-version=v1.0 MLLDHTLLSKLEPYHVQPILFSLHSKPNTAIQFFEWAEKFLNTPHSPQSFCALLQILLRRNLFGPATEVFDKLVKQHGNDHETWYKFCQGFQDFSHEGGS SVFYGFFIENFYRKRMVDTAVQVFVYICRKRIYVSPEVVWGLLDSLLELQVVDKIVDHYDDFCTLTNGDSSSFYRLVMERIIRKGEANLALGLKLHRLLL QKGFTVDIVTCNKVLKSFCLQNKAGISDDYFNELISVGPEPNVITFSTLINKCCKQGNLDKAFQLYDAMAVRGLAADLIVYSILIDGLFKAGKLVEGNKL LSEALDRDIKLDVVVFSSVMDAYVKAGDLEKAVEVYRTMLKEKISISPNLVSYSILIKGLCHNNRTLEASGVFGKMVKHGFKPSVSSYCSLIDGLCKLGN LVDSFQFYMDMKKHGHEPDDVVCNVLINGLCKQGLMNSALRFFFRALEGGLKPNVLILNTLIDGFCRLRCMAGAVKVYRLIEIVGLKPDVVTYTLLIKAA SNVHQLDMALLMYFQMLKKGLEPDAVTYCTLIDGLAKLNNPLAGLKIFALMNRTGMVPDIAIYNVLINIHIRQSQLNEAVRLFERLQLRGPNPDTITYNT LLAGYSSYRKLDNAVKLFEQMSAPNAITFTILIHAFAREGRLEEAMSIFTEMLERGPYPNKVTYSCLIDGYFKAQDMDGAFELYKEMLENKVSPNILSYS MIIDGLCKRGLVEEASCVFRFALEKNLLPDVVTYTILIRGYCKVGKVKKAMAVYGQMVMSGIRPDLFLLRTLDEYLLANSERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	0	1
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	1.7	0.8971
AT1G09040			unknown protein		Lus10029906 [exp]	2.0	0.8962
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	2.4	0.8858
AT1G35660			unknown protein		Lus10028705 [exp]	4.7	0.8578
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	5.0	0.8713
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	6.5	0.8713
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	8.5	0.8683
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	9.7	0.8449
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	12.0	0.8563
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	12.0	0.8693

Compare expression of checked genes

Lus10009465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.