Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10000 65 / 6e-13 Thioredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001283 [exp] 160 / 6e-49 AT4G10000 395 / 5e-138 Thioredoxin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102000 [exp] 61 / 9e-12 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009466 pacid=23149686 polypeptide=Lus10009466 locus=Lus10009466.g ID=Lus10009466.BGIv1.0 annot-version=v1.0 ATGGCGATGAATTCTTCCCCATTTCTGAATTGGAATCGCCCTCTTTCATCACATCATCCCTACCTTCCGATTTCCAGCTGTGTAGTGGTTATTGATTTCT CGTACCGGGCGCGAATTTTTCCCGCCGCCGCCGTCAAATTACCTCCGGCAGGTTGCGGGCAGTTCAGGGGAAACTGGGTTCGTCGGAATGCGAAGTCTTG GGCTGACCCAGATGCTGATTCCAAAGAAATATCTGGCAGTGGAGGAACCAATTCATCATCGTCATCAACCAGCTTCCTTTCTGTTCTATGCCCTCTTCTC AAGCTTTTCTCTAGTGGAGATCCTTCTAAAGAGAGAAACTTCACTTTGGAGCAGATTTCAACTTCTTTTCTGTCCACCTTGGCAAGACTTCCATGGGAGA TTGATCATCCTCTTAAACCTTTTGCAACTCTTTGA
AA sequence Show only first row Show all	>Lus10009466 pacid=23149686 polypeptide=Lus10009466 locus=Lus10009466.g ID=Lus10009466.BGIv1.0 annot-version=v1.0 MAMNSSPFLNWNRPLSSHHPYLPISSCVVVIDFSYRARIFPAAAVKLPPAGCGQFRGNWVRRNAKSWADPDADSKEISGSGGTNSSSSSTSFLSVLCPLL KLFSSGDPSKERNFTLEQISTSFLSTLARLPWEIDHPLKPFATL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	0	1
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	4.2	0.8677
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	5.7	0.8776
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	8.9	0.7940
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	9.8	0.8202
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	11.7	0.8276
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	11.7	0.8376
AT2G30320			Pseudouridine synthase family ...		Lus10026423 [exp]	14.7	0.8242
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	14.8	0.8060
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	17.3	0.8014
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	17.7	0.7569

Compare expression of checked genes

Lus10009466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.