Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 392 / 2e-136 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 333 / 1e-114 ADS1 delta 9 desaturase 1 (.1) AT2G31360 333 / 2e-114 ADS2 16:0delta9 desaturase 2 (.1) AT3G15870 332 / 3e-113 Fatty acid desaturase family protein (.1) AT1G06360 328 / 2e-112 Fatty acid desaturase family protein (.1) AT1G06100 327 / 4e-112 Fatty acid desaturase family protein (.1) AT1G06120 326 / 2e-111 Fatty acid desaturase family protein (.1) AT1G06350 323 / 1e-110 Fatty acid desaturase family protein (.1) AT1G06090 318 / 9e-109 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001279 [exp] 633 / 0 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 467 / 1e-166 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 467 / 1e-166 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 464 / 1e-165 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 421 / 7e-149 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 408 / 2e-144 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 382 / 2e-132 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 364 / 3e-125 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 328 / 9e-113 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 374 / 3e-129 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 371 / 3e-128 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 371 / 5e-128 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10009469 pacid=23149679 polypeptide=Lus10009469 locus=Lus10009469.g ID=Lus10009469.BGIv1.0 annot-version=v1.0 ATGGCAACGAGAGAATTAAAAGCCATACGTGAGCAGCAAATGAAGAGCAACAACGACGGCCAAATGCCAACCCAAGTTTTAGTGACAGCGAAACAACTAA GTATTAATAGCGACGATGGAAACAACAAAACCTGTCACAAAAAGAAGCTCAACGCGTACGACAAAATCGCCGTCGCTAGTGTTTTGGGCACGCATTTGTT GGCTCTGTGCGCACCGTTTTGCTTCAGCCGGGAAGCATTTTTGCTGTCGTTCTCTCTTTATGTTGTTACGGGCCTCTTCGGCATTTGTTTCTCTTACCAT AGGAATCTCGCCCACCAGAGTTTCAAGGTCCCGAAATGGCTTGAGTACTTGTGCGCTTACTTCGGCGCACACGCGCTTCAGGGAGATCCGATGACGTGGG TTAGCAACCATAGGTTTCATCATCAGTATACCGATACGGAGAGGGATCCTCATAGCCCGATGGAAGGGTTCTGGCATAGTCATATGAGCTGGATTTTCGA CTCGGGAGCTATTAGAGAGAAGTGTGGGAAAAGAGACAACGTTGGAGACCTGAAAAACCAAGCATTCTATAGGTGGATTCGTAGGACTTATGTGTTCCAC CCTTTGGGTCTAGCCATTCTCCTCTACACCATCGGTGGATTTCCCTACATAGTTTGGGGCATTGGGGTGAGAGTGGTTGGGTTTTACCATGCCACGTGGT TCGTCAACTCAGCTGCTCACATATGGGGAGGTCGGGCTTGGAACACCAACGACTTGTCGAGAAACAACTGGTGGGTGGCAGTTCTGACATTTGGAGAGGG TTGGCACAACAACCACCACGCGTTCAAGTACTCAGCGAGGCAAGGGCTTGAATGGTGGCAGATTGACATAACTTGGTATACCGTGAAATTCCTTGAAACC TTAGGGTTTGCTTACGATATCAAGCTTCCGAGTCCGGTCCAAATGCAGAAATTGGCAATCCTCAAGAACTGA
AA sequence Show only first row Show all	>Lus10009469 pacid=23149679 polypeptide=Lus10009469 locus=Lus10009469.g ID=Lus10009469.BGIv1.0 annot-version=v1.0 MATRELKAIREQQMKSNNDGQMPTQVLVTAKQLSINSDDGNNKTCHKKKLNAYDKIAVASVLGTHLLALCAPFCFSREAFLLSFSLYVVTGLFGICFSYH RNLAHQSFKVPKWLEYLCAYFGAHALQGDPMTWVSNHRFHHQYTDTERDPHSPMEGFWHSHMSWIFDSGAIREKCGKRDNVGDLKNQAFYRWIRRTYVFH PLGLAILLYTIGGFPYIVWGIGVRVVGFYHATWFVNSAAHIWGGRAWNTNDLSRNNWWVAVLTFGEGWHNNHHAFKYSARQGLEWWQIDITWYTVKFLET LGFAYDIKLPSPVQMQKLAILKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	0	1
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	9.1	1.0000
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	9.4	0.9999
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	12.9	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	15.8	1.0000
					Lus10039439 [exp]	16.3	0.9999
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	16.5	0.9997
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	16.6	0.9997
					Lus10010593 [exp]	16.7	0.9996
					Lus10027374 [exp]	18.2	1.0000
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10040994 [exp]	19.8	0.9986

Compare expression of checked genes

Lus10009469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.