Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71500 300 / 3e-102 Rieske (2Fe-2S) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001278 [exp] 426 / 4e-152 AT1G71500 335 / 3e-116 Rieske (2Fe-2S) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073900 [exp] 319 / 1e-109 AT1G71500 325 / 3e-112 Rieske (2Fe-2S) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009471 pacid=23149749 polypeptide=Lus10009471 locus=Lus10009471.g ID=Lus10009471.BGIv1.0 annot-version=v1.0 ATGGCCACTACCCCCGCCCCCCCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTCTCAATTC CCGACCTCCGCCGCCGGAGCTACGCTCACCCAACGAAAAATTCGTCTCTCCACCTCGCCCTCTCCCGACGTAGAACATCGTGCAATGCTACCGAGGTATC AGTAAGCGAAGGCTCTCCGTCGCCATCGTCAGGCGGAGAGAATTGGGTCCCGGTGGTACCACTGGCGGCGCTGCCGAAAGGTGAGCGGCGCGTGATTATC CAAGACGGCGAGACGATTCTGCTGCTTTGGTATAAAGATCAGGTATTTGCTATCGAGAATCGTTCCCCTGCCGAGGGAGCTTACAGCGAAGGGCTTCTCA ATGCCAAGCTCACTCAGGATGGATGTATAGTATGCCCAACGACGGAGAGCACGTACGATCTGCGAACCGGAGAGGTTAAAGAATGGTACCCGAACAACCC TGTGCTGAGAATCCTCACTCCTTCACTCAGATCACTCTATGTGTATCCACTGAAAACTGATGAAGAAAACATCTACATTGGGATGGTCGGAGGAGTTCAA TCCGATGCATCTGCGGAGATCGTGTTCAGTGGGACTGCTCAACCCGGCTTCACATCCAGTGATGTCAACATTGAGGAGGTGAGAATGGTGGTGGACGAAG ATGCTGGAGGGTTCGGATTCACGAGGAAGAACGAATTGATTAACGGGAAAGCAGCAGCGATCGGGTTCCTGCTGCTGTTGGATTTCGAGCTATTGACAGG TAAAGGGTTCCTCAAAGGTACAGGGTTCTTGGACTTCATATACTCTGTTTCTGCTGCTTTCAACTAG
AA sequence Show only first row Show all	>Lus10009471 pacid=23149749 polypeptide=Lus10009471 locus=Lus10009471.g ID=Lus10009471.BGIv1.0 annot-version=v1.0 MATTPAPPLXXXXXXXXXXXXXXXXXXXXAVSIPDLRRRSYAHPTKNSSLHLALSRRRTSCNATEVSVSEGSPSPSSGGENWVPVVPLAALPKGERRVII QDGETILLLWYKDQVFAIENRSPAEGAYSEGLLNAKLTQDGCIVCPTTESTYDLRTGEVKEWYPNNPVLRILTPSLRSLYVYPLKTDEENIYIGMVGGVQ SDASAEIVFSGTAQPGFTSSDVNIEEVRMVVDEDAGGFGFTRKNELINGKAAAIGFLLLLDFELLTGKGFLKGTGFLDFIYSVSAAFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	0	1
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	1.0	0.9794
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	2.4	0.9695
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	2.4	0.9668
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	3.2	0.9642
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	4.0	0.9659
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	5.5	0.9479
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	5.5	0.9633
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	7.1	0.9369
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	7.5	0.9410
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	7.7	0.9450

Compare expression of checked genes

Lus10009471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.