Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71692 189 / 1e-61 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT2G03710 110 / 9e-31 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 105 / 4e-28 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT4G09960 103 / 1e-27 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G24260 100 / 3e-26 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45660 99 / 3e-26 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT3G58780 99 / 6e-26 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G14210 99 / 8e-26 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT2G42830 99 / 1e-25 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT5G15800 99 / 1e-25 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001277 [exp] 255 / 5e-88 AT1G71692 218 / 8e-73 XAANTAL1, AGAMOUS-like 12 (.1) Lus10005302 [exp] 105 / 7e-28 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003125 [exp] 102 / 9e-28 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10008264 [exp] 104 / 2e-27 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 102 / 7e-27 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003124 [exp] 101 / 2e-26 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026679 [exp] 100 / 2e-26 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 99 / 4e-26 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10031665 [exp] 97 / 4e-26 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102600 [exp] 197 / 8e-65 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G076800 [exp] 187 / 9e-61 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G077200 [exp] 112 / 3e-31 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 107 / 2e-29 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.003G169600 [exp] 105 / 2e-28 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 104 / 5e-28 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.010G154100 [exp] 101 / 9e-27 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115400 [exp] 101 / 1e-26 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G064300 [exp] 100 / 1e-26 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.008G098500 [exp] 100 / 2e-26 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10009472 pacid=23149691 polypeptide=Lus10009472 locus=Lus10009472.g ID=Lus10009472.BGIv1.0 annot-version=v1.0 ATGGCTAGAGGGAAGGTTCAGATGAAGAGGATCGAGAATCCGGTGCATAGGCAGGTGACCTTCTGCAAGCGTAGAGCTGGTTTGCTGAAGAAGGCTAAGG AGCTTTCTGTGCTTTGTGATGCTGAGATTGGTGTCCTTGTTTTTTCTTCTCATGGGAAGCACTACGAGCTTGCCACCAAAGGAACAATGCAAGGGCTCAT AGACAAGTACATGAAATGCAGCCCGGGTTCCGGTTCTGGTTCTAGTTCCGGTTCGGACTCGGGTGCGGCTCAGCCAGTCGTGGAATCCAAGGACCCGAAC CAGAATGCCAAAGAAGAGATCAACATGCTGAAGCAAGAGATCCAAATGCTGCAGAAAGGGCTCAGGTATATGTTTGGAGGAGGAGACTCAGAAATGACAT TGGAGGAGCTGCTGGTGCTTGAGAAACATCTTGAGATTTGGGTTTGCCAGATTCGCTCAACTAAGTCTGAGGCCATTTTAACCGGTCATGTTGTAAGTTT CGAGGTCAATAACTAA
AA sequence Show only first row Show all	>Lus10009472 pacid=23149691 polypeptide=Lus10009472 locus=Lus10009472.g ID=Lus10009472.BGIv1.0 annot-version=v1.0 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVLVFSSHGKHYELATKGTMQGLIDKYMKCSPGSGSGSSSGSDSGAAQPVVESKDPN QNAKEEINMLKQEIQMLQKGLRYMFGGGDSEMTLEELLVLEKHLEIWVCQIRSTKSEAILTGHVVSFEVNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	0	1
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	7.1	0.8701
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	12.6	0.8688
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	13.8	0.8633
					Lus10033952 [exp]	14.9	0.8664
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	15.0	0.8425
AT5G62960			unknown protein		Lus10027692 [exp]	15.7	0.8129
AT5G19875			unknown protein		Lus10034527 [exp]	17.8	0.8498
AT2G15310		ATARFB1A	ADP-ribosylation factor B1A (....		Lus10002817 [exp]	18.3	0.8489
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	24.1	0.8643
					Lus10041944 [exp]	28.3	0.8415

Compare expression of checked genes

Lus10009472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.