Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 566 / 0 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 565 / 0 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G09400 493 / 1e-172 FMN-linked oxidoreductases superfamily protein (.1) AT1G18020 379 / 1e-128 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 379 / 1e-128 FMN-linked oxidoreductases superfamily protein (.1.2) AT2G06050 382 / 3e-128 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001274 [exp] 655 / 0 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 577 / 0 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001275 [exp] 531 / 0 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10013218 [exp] 521 / 0 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10028663 [exp] 373 / 2e-124 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 369 / 7e-123 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10030737 [exp] 246 / 3e-77 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102700 [exp] 580 / 0 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 568 / 0 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 563 / 0 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 561 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 560 / 0 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 546 / 0 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004600 [exp] 541 / 0 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.006G142800 [exp] 376 / 6e-126 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 375 / 1e-125 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 370 / 1e-123 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10009473 pacid=23149731 polypeptide=Lus10009473 locus=Lus10009473.g ID=Lus10009473.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTCAAAAAGCAATCCCTCTTTTGACCCCTTACAAGATGGGGAAGTTCCATCTTTCTCATAGGATTGTTATGGCGCCATTGACTAGACAGA GATCTTATGGGAATGTACCTCAGCCACATGCAGTTTTGTATTACTCTCAAAGGGCTACAAAAGGGGGTCTTATCATAACTGAAGCCACTGGAGTTTCTGA CACTGCTCAAGGGTACACGGATACCCCTGGAATTTGGACTAAAGAGCAAGTTGAGGCATGGAAACCAATTGTTGATGCTGTTCATGCCAAAGGGGGTCTG TTCTTTTGTCAAATTTGGCATGTTGGAAGGTTTTCCAACACAGGCTTCCAACCAAATGGCCAAGCTCCAATCTCATCTACTGACAGGGCATTGCAGACAC AAGAAGGTGACCCTTCGAAATTCTCCACTCCGAGACGATTAAGAACGGAAGAAATTCCCGAGATTGTCAACGATTTCAGACTTGCAGCAAAGAATTGTAT TGAAGCTGGCTTTGATGGAGTTGAGATACACGGAGCCCACGGCTATCTAATCGATCAATTCTTGAAGGATGAAGTGAACGATAGGACCGACCAATACGGA GGCTCTCTAGAGAATCGTTGCCGGTTCGCTCTGGAGATAGTTGAAGCAGTGAGCAAGGAGATAGGAGCAGAGAGAGTTGGAATCAGACTGTCACCCTTCG GCGCCCATGGCAACTGTGGAGACTCGAATCCCGAAGCTTTAGCGCTCTACATGGCCGAATCTCTCAACAAATACGACATCCTCTACTGTCACGCTGTGGA GCCAAGAATCAGGAGCGCTGCTGAACTAATCGAAACACCTCAGACTCTGCTTCCCATGAGGAAAGCTTTCAATGGTACTTTCATGGCTGCAGGAGGGTAC CGTAAGGAAGATGGTAACAAAGCTGTGGAGGAAGGGCGTGCTGACTTGGTAGTTTTTGGACGTTGGTTCTTGGCGAATCCTGATTTGCCGAGAAGATTCG AGCTCGATGCTCCTCTGAACAAGTATGATAGGAACACTTTTTACACATCTGATCCTGTTGTTGGATCTACCACCAAATGGTCAATCTCCAATCTCATGTA CAAACAAAGAAACACAGCCGGACGAAAACTTCCCGGCCCAATATCGCCTCCAAGACAACTAACGACGGAAGAAATTCCTCATATCGTCGATGACTTCAGA GCCGCCGCTAGGAATGCTGTCAAGGCGGGGTTCGACGGAGTCGAGATTCACAGTGCCAATGGCTACTTGATCGAGCAATTCATGAAAGACCGGGTCAACG ACAGGACCGGCCGATACGGAGGTTCTCTAGAGAACCGATGTCGCTTTGCCCTAGAGATAGTAAAAGCCGTGAGCGACAAGATAGGACCGGGCCAAGTCGG GGTCCGGATCTCGCCTTTCTTGGACTGGCTCGACTGTGATGATTCGGACCCAAAAGGTTTGGGCCTGTACATAGCCCAAACCTTGAGCAAGTATGGGCTG GCCTATTGTCATATGATGGAGCCAAGATTTGGGCCCCATGATCAGAATCGTGTGACCCAAGAAAGCCTGGTCCCCATAATCAGGAAGGTCTTTGGGGGAA CTTTTATAACTTCTGGTGGGTTTGATAGGGAAGAAGGGAACCGAGTTGTGGAAGACGGTCGAACCGATTTGGTTGCTTATGGTCGGTCGTTCTTGGCTAA TCCTGATCTACCAAGGAGATTTGAGCTTGATGCTCCTCTTAACATGTTTGATAGAGCTACAGTCTATGCTCATAATCCTGTTGTTGGGTATACCGACTGT CCATACGTTGATCAATTTGGATTTTAG
AA sequence Show only first row Show all	>Lus10009473 pacid=23149731 polypeptide=Lus10009473 locus=Lus10009473.g ID=Lus10009473.BGIv1.0 annot-version=v1.0 MAAAQKAIPLLTPYKMGKFHLSHRIVMAPLTRQRSYGNVPQPHAVLYYSQRATKGGLIITEATGVSDTAQGYTDTPGIWTKEQVEAWKPIVDAVHAKGGL FFCQIWHVGRFSNTGFQPNGQAPISSTDRALQTQEGDPSKFSTPRRLRTEEIPEIVNDFRLAAKNCIEAGFDGVEIHGAHGYLIDQFLKDEVNDRTDQYG GSLENRCRFALEIVEAVSKEIGAERVGIRLSPFGAHGNCGDSNPEALALYMAESLNKYDILYCHAVEPRIRSAAELIETPQTLLPMRKAFNGTFMAAGGY RKEDGNKAVEEGRADLVVFGRWFLANPDLPRRFELDAPLNKYDRNTFYTSDPVVGSTTKWSISNLMYKQRNTAGRKLPGPISPPRQLTTEEIPHIVDDFR AAARNAVKAGFDGVEIHSANGYLIEQFMKDRVNDRTGRYGGSLENRCRFALEIVKAVSDKIGPGQVGVRISPFLDWLDCDDSDPKGLGLYIAQTLSKYGL AYCHMMEPRFGPHDQNRVTQESLVPIIRKVFGGTFITSGGFDREEGNRVVEDGRTDLVAYGRSFLANPDLPRRFELDAPLNMFDRATVYAHNPVVGYTDC PYVDQFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	1.0	0.9763
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	2.0	0.9738
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	2.2	0.9565
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	2.4	0.9628
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	2.8	0.9582
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	3.0	0.9453
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	3.5	0.9523
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	4.5	0.9448
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	4.6	0.9509
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	4.9	0.9439

Compare expression of checked genes

Lus10009473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.