Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06480 707 / 0 DEAD box RNA helicase family protein (.1) AT3G01540 619 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 613 / 0 DEAD box RNA helicase family protein (.1.2) AT1G55150 415 / 5e-133 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 414 / 3e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G42520 305 / 2e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 300 / 8e-89 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 305 / 2e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 291 / 1e-86 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G58570 293 / 3e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001272 [exp] 1237 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 610 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 609 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 605 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10037646 [exp] 422 / 2e-135 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 421 / 3e-135 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 410 / 1e-129 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 407 / 2e-128 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 300 / 6e-89 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G152400 [exp] 855 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.017G071400 [exp] 620 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 617 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 421 / 2e-135 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 419 / 6e-133 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 407 / 2e-128 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 296 / 2e-87 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 295 / 4e-87 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 305 / 1e-86 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 298 / 2e-86 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10009474 pacid=23149690 polypeptide=Lus10009474 locus=Lus10009474.g ID=Lus10009474.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCAGAATCTGCTGCGGCTGCTCTTGGGCCAGCTTATGCACCAGAAGACCCTACACTGCCTAAGCCATGGACAGGATTGATTGATAGGAGCA CTGGTATGTTATACTACTGGAATCCTGAGACCAATGTTACGCAATATGAAAAGCCAGCTTCTGCTTTGCCTCCTCCTGCAACTGGCTCGACACCTAAGTT GGCTCAGATACCAATGCCTCAGTCTGCTCAACAAACTAATGGGATGGTGGGAGGTCATGGTGCTCAACAACAGCAGGGGCAACAATTCAGGCAAATGCAT TATCAGGGCCAACAAACACAAGGGCAGCAGCAGATGAGTGCCTTGTCTCAACAGCCTCAGCAAGGGCAAGGCTTAGGACAGCCACAACAACATTCTTCGG TGCAGCATGTATCTAGCCAGCCGGGTTCACAACAACAGGGAATGCAAATGGGGCAGGTTGGTCAACAACAAGGGCAGTTTCGACCCCAAATGATGCAGCA GAATCCCGGTCAGCATATGTTTTCACATACGGGACAGCAAATGCATCAACCTTCAGGCCAGCCTATGCCACAGCAGTCAAGCCAGCCGATGCCGCAACAA CCAGGGCAGCCCATGCAGCAGCAGCCAGGGCCAGGCCAGCCTATGGCGCAGATGACACAAACACAAGGACAGTTGTCCTATCAGCAAATGCAGTACATGC CTTACCAACAAAATGTGGGTCCCCCAGTGCACCAGCAGTATGCTACCCAAATGAAATCTGCAATGGCTCGGCCAGAGGATGGTGATCTGCCACAGGGTGG CCAGGCTGGGTACCCTACATCTCAGTTTCATCATCCCACTGGTGGATCCTCAGCTCAAAACATGCCAATTGGGAACAAATCCCCGTTGATGCCTCCTGCA AGTGGTCACTTCAATCGAGGTCAGCAAGTCACTGGACCCTCCGGGCCTGATTTAGGACATAAACCACCGATTCAAAGGCTTCAGAATCTCACAGGTCCGC CTGGTGCACATAATCAACAACCCAATGTGCCTCCTGTTGGATTGAAGATGGGCCACGAAAATGCTCCTCCTCCTAGGTCGGGCAATGACTACTACCCGAA TCCAAAAATTGGAGGCTCCATGATGAGTCCAAACCAACCTAATGGTGCTCCTATGCCTATGGCAAGGAATCAGCAGGATGGAAGAATGGGTGGAGCCCCA TTTCCAAATTCCGGACCTGCTTATTCAGGTGGGCTTAGCTCACCTGGGCAGGGAATGCACAATGCGTATAACCATGGAAATATCAGCTCACAGTTTCCTG CTAGTGGGATGATGATGCCTCCATTCAGCGGCCCTGCAGACATGTCTAACCTCTCGCCTGTTGATGCTTATCGCCAAAAGCATGAAGTTTCAACAATGGG TGACAACGTTCCTGCTCCTTTCATGACATTTGAAGACACTGGTTTCCCTCCAGAGATATTGAGAGATATGGGTGGTTGGCCTTTGACCAATTCACACCTG ATATGCTCCTCATTTGTCTTTATTGGCCTCTCTTTAGTTGCTTCTATACATTCTGCTGGTTTCTTGTTTCCCACGCCAATCCAGGCACAAACATGGCCGA TAGCACTACAGAGCCGAGATATAGTTGCCATTGCAAAAACTGGTTCTGGGAAAACTCTTGGTTACTTAATCCCGGCATTTATTCTTCTAAGGCAGCGTCG GAACAATCCTCAGAATGGTCCCACAGTATTGGTTTTAGCTCCAACTAGAGAGCTTGCCACACAAATCCAAGAGGAGGTGAACAAATTTGGTCGATCTTTT AGGGTGTCTTGCACGTTGCTTGAGCATTACATGATCCATCCATTGAACTTGCAGTGCCTCTATGGCGGTGCACCGAAGGGTCCTCAATTGAATGAACTAG AACGCGGCGCTGATGTGGTTGTGGCAACTCCTGGTCGTCTTAACGACATCCTTGAAATGAAGAGGATTGATTTCCGTCAAATTTCGCTCCTTGTTCTTGA CGAGGCAGATAGAATGCTTGATATGGGTTTCGAGCCTCAAATACGTAAGATTGTAAATGAGATACCCCCTAGGAGGCAAACACTTATGTACACTGCAACT TGGCCAAAAGAAGTGAAGAAGATAGCAGGTGATCTTCTTGTCAACCCTGTTCAAGTCAACATTGGAAATGTTGATGAACTTGCTGCAAACAAATCCATCA CTCAGTTTGTGGAAATGGTACCCCATATGGAGAAGGAGAAGCGTTTAGACCAGATCTTAAGGTCACAAGAGAGAGGTTCAAAAGTCATTATCTTCTGTTC CACTAAGAGATTGTGTGACCAGCTAGCTAGAGGTATTTTGCGCAATTTTGGGGCCAACGCAATCCACGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTT TTGAACCAGTTCAGGAGTGGGAAGTCACCAATCTTAGTCGCCACTGATGTTGCTGCTCGTGGCCTCGACATTAAGGACATACGGGTTGTGGTTAATTATG ATTTCCCTACTGCGATCGAGGACTACGTGCATCGAATTGGCAGAACCGGAAGGGCAGGTGCGACTGGTGTGGCGTACACATTCTTCTCTGAGCAGGACTG GAAGCATGCACCGGATTTGGTCAAAGTTTTGGAGGGAGCTAACCAGCAGGTGCCTCCAGCAGTTCGGGAGATTGCTTCGCGTGGTGGTCCTGGTTCTGGT TTCATGAAAGACCGAGGTCCGATGAATCGTTTCGATCCCGGTCCTGGAGCCGTCGGTGGAGGTGGTCGCTGGGACGGTGGAGGCCGCGGTGGTGGGATGA GGGACGGTGGATACGGTGGCCGCGGTGGAATGTTGAGGGACGGAGGATTCGGTGGCCGCGGTGGAATGGGGAGGGACGGAGGGTTTGGTGGACGAGGTGG AATGCGCGATGACGGATTCGGTGGACGTGGTGGAATGCGCGATGAAGGAGGATTCGGTGGAAGAGGTGGCCGAAACGACATGTTTGCTGGTCGTGGTGGG GGGAATAGGGGTCGAGGAGGTTTCGGTGGGCCTGGCGGTTGGGGTAGAAACGAGCGGGGTCCACAAGATCGTTACGACAACCGAGGAGGAGGACGCGGCG GTCGTGGCGGAGGAAGATTCGATGGGAGGAGAGATATGAGCAGCGGCAGGAGTAGGGGTAGAAGCCCGAGCCGTAGCCGAAGTAGAAGTTGGAGTAGGAG CAGGAGCCGGAGTAGGAGTTGGTCCAGGGACCGGAGTCGAAGCTACAGTAGGAGTCGAAGCCCGAAAAGAAACCGTAGCTACAGCAGGAGTCCGCGCCTT CGCAGTAGTCGTAGCTATAGCCGTAGCCCTGATGGAGGAAGCCGTAGCCCTACCCCCGAAAGATTCGTTAGGCGTCAAAAGCAACGAGAGTCCCTGTTCG ATGTCAAGGATGTCCCAACGGCAGCTTCTGAACCAATGCTCTCTAACCCAACTACGGATCCTGTCGTGAACTCTGTTTCGGAGATGGAACAAGCAGCCGT TGAGAATGCTGGACCACCACCGGCTGACGGGGAGGGACCTGAATCGGCAGCCGAAACTTGA
AA sequence Show only first row Show all	>Lus10009474 pacid=23149690 polypeptide=Lus10009474 locus=Lus10009474.g ID=Lus10009474.BGIv1.0 annot-version=v1.0 MAAAESAAAALGPAYAPEDPTLPKPWTGLIDRSTGMLYYWNPETNVTQYEKPASALPPPATGSTPKLAQIPMPQSAQQTNGMVGGHGAQQQQGQQFRQMH YQGQQTQGQQQMSALSQQPQQGQGLGQPQQHSSVQHVSSQPGSQQQGMQMGQVGQQQGQFRPQMMQQNPGQHMFSHTGQQMHQPSGQPMPQQSSQPMPQQ PGQPMQQQPGPGQPMAQMTQTQGQLSYQQMQYMPYQQNVGPPVHQQYATQMKSAMARPEDGDLPQGGQAGYPTSQFHHPTGGSSAQNMPIGNKSPLMPPA SGHFNRGQQVTGPSGPDLGHKPPIQRLQNLTGPPGAHNQQPNVPPVGLKMGHENAPPPRSGNDYYPNPKIGGSMMSPNQPNGAPMPMARNQQDGRMGGAP FPNSGPAYSGGLSSPGQGMHNAYNHGNISSQFPASGMMMPPFSGPADMSNLSPVDAYRQKHEVSTMGDNVPAPFMTFEDTGFPPEILRDMGGWPLTNSHL ICSSFVFIGLSLVASIHSAGFLFPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRQRRNNPQNGPTVLVLAPTRELATQIQEEVNKFGRSF RVSCTLLEHYMIHPLNLQCLYGGAPKGPQLNELERGADVVVATPGRLNDILEMKRIDFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTAT WPKEVKKIAGDLLVNPVQVNIGNVDELAANKSITQFVEMVPHMEKEKRLDQILRSQERGSKVIIFCSTKRLCDQLARGILRNFGANAIHGDKSQGERDWV LNQFRSGKSPILVATDVAARGLDIKDIRVVVNYDFPTAIEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAPDLVKVLEGANQQVPPAVREIASRGGPGSG FMKDRGPMNRFDPGPGAVGGGGRWDGGGRGGGMRDGGYGGRGGMLRDGGFGGRGGMGRDGGFGGRGGMRDDGFGGRGGMRDEGGFGGRGGRNDMFAGRGG GNRGRGGFGGPGGWGRNERGPQDRYDNRGGGRGGRGGGRFDGRRDMSSGRSRGRSPSRSRSRSWSRSRSRSRSWSRDRSRSYSRSRSPKRNRSYSRSPRL RSSRSYSRSPDGGSRSPTPERFVRRQKQRESLFDVKDVPTAASEPMLSNPTTDPVVNSVSEMEQAAVENAGPPPADGEGPESAAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06480			DEAD box RNA helicase family p...		Lus10009474 [exp]	0	1
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	3.7	0.8333
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	5.1	0.7841
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	8.1	0.8263
AT3G04490			unknown protein		Lus10042566 [exp]	20.0	0.7969
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	20.2	0.8059
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	25.1	0.8051
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024773 [exp]	31.6	0.7865
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	38.5	0.8034
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	48.5	0.7532
					Lus10001494 [exp]	50.8	0.7301

Compare expression of checked genes

Lus10009474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.