Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46690 169 / 6e-50 bHLH bHLH071 beta HLH protein 71 (.1) AT1G22490 117 / 2e-30 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 118 / 6e-30 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 114 / 2e-29 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 113 / 9e-29 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 100 / 2e-24 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G46810 100 / 6e-24 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 94 / 2e-21 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 84 / 3e-19 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 83 / 6e-18 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001271 [exp] 389 / 8e-136 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 129 / 8e-34 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 122 / 6e-32 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 120 / 3e-31 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 117 / 1e-29 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 110 / 3e-27 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 94 / 6e-23 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 93 / 2e-22 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 91 / 1e-20 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093200 [exp] 231 / 2e-74 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 135 / 4e-37 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.013G025900 [exp] 118 / 2e-30 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 118 / 6e-30 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 117 / 6e-30 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 113 / 9e-29 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 112 / 7e-28 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 108 / 1e-26 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G071100 [exp] 106 / 3e-26 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 102 / 6e-25 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009475 pacid=23149707 polypeptide=Lus10009475 locus=Lus10009475.g ID=Lus10009475.BGIv1.0 annot-version=v1.0 ATGGCGGCGACGGAAGCAATGCTGTCTGCTGCTGCAGCTTCCTCTGCCAACGAGTTCACCAACTTCATCGTCATCTACGACACCATCTCCGCCACCCCAT GCACCTCCGACACTTACTACTACCCCGGCAATTTGGCTCCTGCGCCGGCAGCGCTACCACCACCTCCTCCTCCTCCGCCGGCGAAAGTGGCACGCGGAGG TGGGAGTGACGTCGGGAGGAGCAAGAAGAGGAGGAGGAAGACGAGAGTTTGTAAGAACAAAGAGGAAGCGGAGACTCAGAGGATGACACACATTGCCGTC GAGAGGAACCGGCGGAAGCTTATGAATGAACACCTGGCTCTCCTCAGATCCCTCATGCCTCCTTCCTATGTTCAAAGGGGAGACCAAGCATCAATAGTTG CAGGAGCAATCGAGTTCGTGAAGGAGCTAGAACACTCACTACACTCCCTCCAAGCTAAAAAGCTCCAACATCCATCTCCACCAACTCCGCCATTTTCCCA GTTCTTCAACCACACTAATTCTACTACTACCCAAGACACCACTAACAACAACAGCAAGTCTACCAACTCTTTCAACAACACCAAGACAATCCTAACCACT CCATCATCATCATCATCACCTTCATCATCATCCTCTAATGTGGACGACGACGGGATTGCGGGGATTGAGGTGACTCTGATCGAGACGCACGCCAATCTCC GGTTCCTCACGAGGAAGCGATCGATGAATCGTCGTCCTTGGCAGCTCTCGAAGTTGGTTGGCGGGTTCCATGCGCTTCGTCTCAGTGTTCTTCACTTCAG CCTCACCACCGTCCATCCGTTTTCCCTCTACTCCATTAGCGCCAAGGTTGAAGAAGGATGCCAGCTGAGTTCAGTAGACGACATAGCAGCGGCAGTGCAT CACATGCTCAGACTAATCATTGAGCAAGATGAAGAAGATCATCACCATGGCTCTTCTTCTCTTCTTCATCCTCACATCACCTGA
AA sequence Show only first row Show all	>Lus10009475 pacid=23149707 polypeptide=Lus10009475 locus=Lus10009475.g ID=Lus10009475.BGIv1.0 annot-version=v1.0 MAATEAMLSAAAASSANEFTNFIVIYDTISATPCTSDTYYYPGNLAPAPAALPPPPPPPPAKVARGGGSDVGRSKKRRRKTRVCKNKEEAETQRMTHIAV ERNRRKLMNEHLALLRSLMPPSYVQRGDQASIVAGAIEFVKELEHSLHSLQAKKLQHPSPPTPPFSQFFNHTNSTTTQDTTNNNSKSTNSFNNTKTILTT PSSSSSPSSSSSNVDDDGIAGIEVTLIETHANLRFLTRKRSMNRRPWQLSKLVGGFHALRLSVLHFSLTTVHPFSLYSISAKVEEGCQLSSVDDIAAAVH HMLRLIIEQDEEDHHHGSSSLLHPHIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	3.5	0.8487
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	6.5	0.8168
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	7.7	0.8081
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10022391 [exp]	8.3	0.7861
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	8.4	0.8618
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	19.5	0.8236
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	20.3	0.8412
					Lus10006809 [exp]	20.9	0.8275
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	22.0	0.8055
AT3G27390			unknown protein		Lus10014881 [exp]	23.7	0.7794

Compare expression of checked genes

Lus10009475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.