Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72180 883 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 584 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 566 / 0 HSL1 HAESA-like 1 (.1) AT5G49660 546 / 5e-179 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 545 / 2e-178 HSL2 HAESA-like 2 (.1) AT1G75820 525 / 9e-171 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 520 / 1e-168 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G19700 519 / 3e-168 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT4G28490 513 / 4e-166 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 494 / 9e-159 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007232 [exp] 609 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 600 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018636 [exp] 558 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 544 / 1e-177 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 542 / 6e-177 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10028234 [exp] 513 / 2e-166 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007233 [exp] 509 / 7e-165 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013562 [exp] 499 / 5e-161 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 498 / 2e-160 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078400 [exp] 1043 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G106800 [exp] 587 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G049100 [exp] 574 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 561 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 559 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.009G081800 [exp] 552 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.017G016600 [exp] 539 / 5e-176 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.002G111700 [exp] 536 / 1e-174 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G088100 [exp] 514 / 9e-167 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G019900 [exp] 511 / 1e-165 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009476 pacid=23149696 polypeptide=Lus10009476 locus=Lus10009476.g ID=Lus10009476.BGIv1.0 annot-version=v1.0 ATGTCATCCCTCAATTATCTTGCAATGACGGTTTACTACCTCCCTTTGATTTTGATCATCCTCTCAATTTTCCCGCCATCCTCAACCGCCATAACAGAAA CGGAAGCTCTGTTTCAGTTCAAGTCCCAGCTCAAAGACCCGATGAGAGTCTTCGAGTCGTGGAAAGCTTCTGAGTCTCCATGCAATTTCACGGGAATAAC CTGCTATCCGATCTCCGGGAAAGTGATATCGGTCTCGCTTGATGACAAGGGAATCTCGGGGGATATTTCGCCGTTGATTGCAGAGATCACGGAACTCGAG ACGCTCTGGCTGCCGAGTAATTCAATCTCGGGAAAGATTCCGCTGGAGATTGCAAGTTTGAAGAATCTCCGGGTGCTGAATTTGACCGGGAACCAGATGG TGGGAGAAATTCCTGATCTTACACCCCTGACGAAATTGGAGGTTCTTGATCTGTCCCTCAACTACTTCTCCGGCAGGATTCCGGCTTGGATCGGAGAGTT GAGTTCTTTAACTGCGTTAGCTCTGGGACAGAATGAGTATGCAAAGGGAGAAATTCCTAATGGCATAGGAAAGCTGAAAAACCTGACGTATCTGTTCTTA GCGGATTCACATCTGATTGGCTCGATCCCCGATTTGATCTTCGAGCTAACCAATCTGGGAACGCTTGATCTATCAAGGAACAAGCTTACAGGTCAGATCC CGAAATCCATCTCCAAGCTACACAACCTGTGGAAGATCGAGCTTTTCGACAACTTCCTGACAGGGGAAATACCTGAGGAGCTCTCCAACCTGACTCATTT GAAAGAAATCGACATTTCCGCCAACGAATTCCATGGCACGATTCCTGTTAGTCTCGGAAGATTGGACTTTTCCGTGTTCCAAGCGTATGAGAATCATTTC ACTGGAGAAATCCCTTCAGGTTTCGGAGAAATGCATAGCCTGTACGGATTCTCGATCTACGGTAACAACTTCTCTGGTCCGTTCCCTGCAAATTTCGGGA GGTATTCGGCTCTAACCAGCTTCGACATCTCCGAGAATCAGTTCACAGGAAGCTTCCCTGAATTCTTGTGCCAAGGGCGGAAACTGCAGTTTTTACTCGC ATTGCAGAACAACTTTACAGGAGCGGTTCCGGGTTCGTATTCCAGGTGTAAATCGGTCGAAAGGTTTCGAATCAACGACAACAAGATGTCAGGTGAAATT CCTGAAGGGGTTTGGGCTATGCCGTTGGTGAAGATAATCGACTTCAGCTCCAACGATTTCACCGGATCGATCTCCTCCGAAGTCGGCCTTTCCTCGAGTT TGAACCAGTTGATTCTGTTTAACAACCGGTTTTCAGGATTGATTCCATCTGAAATTGGAAATCTGGCGAGTCTCGAGAGGATTTACTTGAACAACAATAA CTTCTCAGGAACAATTCCTTCAGAGATTGGGAAGCTGAAGCAGCTTTCTTCATTGCAATTGGAGTTGAATTCTCTCTCAGGATCTATGCCATCAGATATT GCTCAATGTACTCAATTAGTCGACCTGAATCTCGCTATGAATGAACTAACCGGTCAGATTCCGAGCGGTTTCTCAAATCTGATGTCTATGAACTCGTTGA ATCTCTCGAGGAATCGACTCACTGGACCGGTTCCTGACGATCTCGGTTTGCTGAAGCTAAGCTTACTCGACCTGTCCGAAAACCAGTTATCAGGAATGGT ACCTCCTGCACTTCTCTCCATGGTAGGGGAGAAAGCTTTCTTGATGAACAAGCAACTCTGTGTTGAAAAAAACACGACCGATTCATCTCTAAACGTCTGC TCAGTCAATGAAGAGAGTTCCAGATCGTCGTTAAAGCTTGCATTGTTCTCAGCAATCGCGGTCGCATTGATCCTCAGTCTAGCTTGTCTTTTATTCACAA GCTACATCAACTTGAAGCATGGATTGACCACCGAAGATCGCGAGATGAACTTAGAATCTGGGAAGGAATGTACGATCTCGTCCTTCTCGTCTTTCTACCA AGTTGAAATCGATGCAGACGAGATAGGCAACAACTTGGAGGAAGAGAATGTGATTGGGAGCGGTGGAACAGGGAAAGTCTACAGGTTGGAACTGACTAAG AAGAAGGATTTCGGAGGGAAACGGAAATCGATTTCCGAGGTTGCTGTGAAAAAGCTGTGGAAAGGAGACGGCTTGAAATTCTTAACTGCAGAAATGGAGA TACTGGGAAGCATCAGGCATAGGAATGTGGTGAAATTGTACTCATGTCTTCTCAAAGGTGGATGTAGCTACTTGGTTTACGAGTATATGCCGAAAGGGAA TTTATTCGAAGCGATTCACAGGAAGATCGATAATAAAGGCGGCGAATTGCCTGAATTGCATTGGATTCATAGGTACAGAATTGCAGTAGGAGCTGCTAAG GGGATTTCGTATCTTCACCACGATTGCTCTCCGCCTGTCATCCATCGAGACATCAAGTCGAGTAATGTGCTGCTTGACGATGATTACGAGGCGAAGATTG CTGATTTCGGAGTTGCGAGGAAGCTTGCTGAGGTTTCTGAACAAGGGTGTGATCACAGCTGCTTTGCTGGTACTCATGGATACATTGCTCCTGAGATGGC GTATTCGATCAAGGTCACAGAGAAGAGCGACGTGTACAGCTTTGGAGTGGTGCTGCTCGAGCTCGTAACGGGGAAGAAACCGGTCGAGGAAGAGTACGGA GAAGGGAAAGACATAGTGTCGTGGGTTTCCAAGCATTTGAGGGACATTGACAGTGTTCTTAACAAGGTTCTGGACGGTTCTATCGCGAGTGATGAAACTG TGAAGGATGACATGCTGAAGGTATTGAAAATCGGGCTTCTTTGCACCACGAAGCTTCCCAGTCTCCGGCCGACGATGCGAGATGTGGTGAGGATGCTCGT CGACGCCGAGCCTTCCTGTTCGGCCGAGCCGCTCGACGATTCTTCGAATGCGGATGGTTTGAAAGAAAATCAAAAGCCTTTCCTGGAATGA
AA sequence Show only first row Show all	>Lus10009476 pacid=23149696 polypeptide=Lus10009476 locus=Lus10009476.g ID=Lus10009476.BGIv1.0 annot-version=v1.0 MSSLNYLAMTVYYLPLILIILSIFPPSSTAITETEALFQFKSQLKDPMRVFESWKASESPCNFTGITCYPISGKVISVSLDDKGISGDISPLIAEITELE TLWLPSNSISGKIPLEIASLKNLRVLNLTGNQMVGEIPDLTPLTKLEVLDLSLNYFSGRIPAWIGELSSLTALALGQNEYAKGEIPNGIGKLKNLTYLFL ADSHLIGSIPDLIFELTNLGTLDLSRNKLTGQIPKSISKLHNLWKIELFDNFLTGEIPEELSNLTHLKEIDISANEFHGTIPVSLGRLDFSVFQAYENHF TGEIPSGFGEMHSLYGFSIYGNNFSGPFPANFGRYSALTSFDISENQFTGSFPEFLCQGRKLQFLLALQNNFTGAVPGSYSRCKSVERFRINDNKMSGEI PEGVWAMPLVKIIDFSSNDFTGSISSEVGLSSSLNQLILFNNRFSGLIPSEIGNLASLERIYLNNNNFSGTIPSEIGKLKQLSSLQLELNSLSGSMPSDI AQCTQLVDLNLAMNELTGQIPSGFSNLMSMNSLNLSRNRLTGPVPDDLGLLKLSLLDLSENQLSGMVPPALLSMVGEKAFLMNKQLCVEKNTTDSSLNVC SVNEESSRSSLKLALFSAIAVALILSLACLLFTSYINLKHGLTTEDREMNLESGKECTISSFSSFYQVEIDADEIGNNLEEENVIGSGGTGKVYRLELTK KKDFGGKRKSISEVAVKKLWKGDGLKFLTAEMEILGSIRHRNVVKLYSCLLKGGCSYLVYEYMPKGNLFEAIHRKIDNKGGELPELHWIHRYRIAVGAAK GISYLHHDCSPPVIHRDIKSSNVLLDDDYEAKIADFGVARKLAEVSEQGCDHSCFAGTHGYIAPEMAYSIKVTEKSDVYSFGVVLLELVTGKKPVEEEYG EGKDIVSWVSKHLRDIDSVLNKVLDGSIASDETVKDDMLKVLKIGLLCTTKLPSLRPTMRDVVRMLVDAEPSCSAEPLDDSSNADGLKENQKPFLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72180			Leucine-rich receptor-like pro...		Lus10009476 [exp]	0	1
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	1.4	0.9470
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	3.0	0.9379
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	3.6	0.9525
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	9.6	0.9081
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	14.2	0.9311
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	17.9	0.9139
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	19.7	0.9318
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	20.2	0.9109
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	21.3	0.9365
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	22.6	0.9214

Compare expression of checked genes

Lus10009476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.