Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23710 199 / 8e-64 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003505 [exp] 442 / 8e-160 AT5G23710 203 / 1e-65 DNA binding;DNA-directed RNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G003700 [exp] 247 / 8e-83 AT5G23710 232 / 3e-77 DNA binding;DNA-directed RNA polymerases (.1) Potri.018G000800 [exp] 242 / 8e-81 AT5G23710 233 / 2e-77 DNA binding;DNA-directed RNA polymerases (.1) Potri.003G033600 [exp] 237 / 6e-79 AT5G23710 209 / 6e-68 DNA binding;DNA-directed RNA polymerases (.1) Potri.003G221301 [exp] 94 / 4e-24 AT5G23710 77 / 2e-17 DNA binding;DNA-directed RNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05158 [flax] [poplar] RNA_pol_Rpc34 RNA polymerase Rpc34 subunit
Representative CDS sequence Show only first row Show all	>Lus10009479 pacid=23149683 polypeptide=Lus10009479 locus=Lus10009479.g ID=Lus10009479.BGIv1.0 annot-version=v1.0 ATGAGCGGAGCACCGGAACCAAAATCGTCGAACAAGCGAAAGCGGCCAGAGGCCGATGCTTTAACAGGAAACGACAAGATCATCTACAATCTAATCCGCG AGAAAGAAGATGTGGGGATAACCAAGTATTCAATCGGGAAAAATACCGCCATACCGACGGCTACAACCACCAAAATCTTGAAGAAACTACTCGAGAGAAA CTTGATCAAGGAGGTAAAGAACGTGAAGAACAAAGGCAGCAACATGTACATGGCGTCCGAGTTCAAACCCTGTGCAGAGCTCACTGGAGGCGACTGGTAC AGCGATGGCAACCTCGACATCGAGTTCGTCAATGCCTTTAAAGAAAACTGCTTGAAGGTAGTGACGAAGTTGAAGGTGGCCACGCTGGAGAGCGTCATGG ACTTTATGAAGTCGAACGGAATGTTTATGGTCGAGGTCACGAAGAAGCAGTTCCAAGAGATCTTAAAGGCTCTGGTTCTGGACAATGCTTTGTTGGAAGT GAAGAGCACTGGTGTTGAGGAGTTTAGTTCCATACCTGTTGGGAAAGTTTGCTACAAGGCTGCTGCTGCTTCTGCTACTGGTGAGCGAGGAGTGGCCGCG GAGCCAAGATTGGGAGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCCAGGATTGGTAGCTGTACTCCTGATGGAGTCATCTCTCCTAAGACTTGTGTCT ACTTCCAGAAATGGCTCGACTTTTGA
AA sequence Show only first row Show all	>Lus10009479 pacid=23149683 polypeptide=Lus10009479 locus=Lus10009479.g ID=Lus10009479.BGIv1.0 annot-version=v1.0 MSGAPEPKSSNKRKRPEADALTGNDKIIYNLIREKEDVGITKYSIGKNTAIPTATTTKILKKLLERNLIKEVKNVKNKGSNMYMASEFKPCAELTGGDWY SDGNLDIEFVNAFKENCLKVVTKLKVATLESVMDFMKSNGMFMVEVTKKQFQEILKALVLDNALLEVKSTGVEEFSSIPVGKVCYKAAAASATGERGVAA EPRLGAMASIPCGVCPRIGSCTPDGVISPKTCVYFQKWLDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10009479 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10000095 [exp]	5.5	0.8407
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	8.2	0.8538
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	12.8	0.8556
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	20.0	0.8217
AT4G14320			Zinc-binding ribosomal protein...		Lus10017396 [exp]	20.3	0.8530
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	25.6	0.8320
AT4G18100			Ribosomal protein L32e (.1)		Lus10020410 [exp]	33.6	0.8423
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	36.0	0.8406
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	39.6	0.8239
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	40.9	0.8330

Compare expression of checked genes

Lus10009479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.