Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09960 276 / 3e-93 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 263 / 6e-88 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 257 / 8e-86 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 253 / 6e-84 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 159 / 2e-47 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G60910 155 / 4e-46 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G45650 153 / 4e-45 MADS AGL6 AGAMOUS-like 6 (.1) AT2G03710 150 / 6e-45 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G26310 151 / 3e-44 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G57230 150 / 3e-44 MADS AGL16 AGAMOUS-like 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008264 [exp] 331 / 3e-114 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 325 / 3e-112 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 157 / 4e-46 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005080 [exp] 154 / 4e-45 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 150 / 5e-45 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004638 [exp] 151 / 2e-44 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 150 / 9e-44 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034662 [exp] 149 / 1e-43 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10026678 [exp] 148 / 2e-43 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104900 [exp] 298 / 3e-102 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 271 / 7e-92 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 249 / 1e-82 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 244 / 7e-81 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 160 / 7e-48 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.003G169600 [exp] 158 / 5e-47 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G109601 [exp] 155 / 4e-46 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 155 / 8e-46 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.008G098400 [exp] 154 / 1e-45 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.015G134800 [exp] 154 / 3e-45 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10009481 pacid=23149742 polypeptide=Lus10009481 locus=Lus10009481.g ID=Lus10009481.BGIv1.0 annot-version=v1.0 ATGGGTCTTTATAGCTACTTCTTGGCTATGGATTTCTCAAGATCTGATAAAAAAAGCAACAAAGTTGAAAACTTTCAAATACCCTTTGACTCAGATCTTA TGGCCTTGGCAGATCTAGTAGAAGAGATCACACCCACCATTAACAGCAGCGGCAGCAGTAGCAGCAGCAGCGGCATGGGGAGGGGGAAGATCGAGATAAA GAGGATCGAGAGCAAGACGAATCGGCAGGTGACCTTCTGCAAGAGAAGGAATGGACTGCTGAAGAAAGCTTATGAGCTGTCTGTGCTCTGTGATGCTGAG ATCGCTCTCATTGTCTTCTCCAGCCGCGGCCGCCTCTATGAGTACTCCAACAACAACAACATCAAGTCGACTATCGAGCGGTACAAGAAAGCGATCTCCG ACGACGGTCCTTACACTCCGTCCATGGCAGAAGTCAATACTAAGTATTACCAGCAGGAGTCAGCCAAGCTAAAGCAACAGATTCAGATGCTTCAGAACTC CAACAGCATGCTTGCAAAGCACCTTATGGGAGAATCCTTGAGCACACTCTCTATGAAGGAGCTGAAGAATTTGGAGACCAGAGTTGAACGTGGCATCACC AAAATCAGGGCCAAGAAGCATGAGCTTCTGCTAGCTGAAATCGGATATCTTCAGAAAAGGGAGGTCGAGCTGGAGAACGAGAATGTGTCTCTTCGTACCA AGATTGCGGAGGTGGAGAGGGCTAACGACGAGCAGCAGCAAGCGAACACACAAGAGCTGAAGGCGATCCACGAATTTCAAGCCGCATCTCGCAACTTCTT CGCTCCGGTCCACCATCATCAAATGATGGATCCTCCTGATCAGCCGTGGGATTCTAAGCCGTTCAGTATTTCCGGAAGCCACCACCACGAGTAA
AA sequence Show only first row Show all	>Lus10009481 pacid=23149742 polypeptide=Lus10009481 locus=Lus10009481.g ID=Lus10009481.BGIv1.0 annot-version=v1.0 MGLYSYFLAMDFSRSDKKSNKVENFQIPFDSDLMALADLVEEITPTINSSGSSSSSSGMGRGKIEIKRIESKTNRQVTFCKRRNGLLKKAYELSVLCDAE IALIVFSSRGRLYEYSNNNNIKSTIERYKKAISDDGPYTPSMAEVNTKYYQQESAKLKQQIQMLQNSNSMLAKHLMGESLSTLSMKELKNLETRVERGIT KIRAKKHELLLAEIGYLQKREVELENENVSLRTKIAEVERANDEQQQANTQELKAIHEFQAASRNFFAPVHHHQMMDPPDQPWDSKPFSISGSHHHE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	3.3	0.9514
					Lus10030905 [exp]	4.2	0.9277
					Lus10020564 [exp]	5.5	0.9431
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	5.9	0.9198
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003457 [exp]	6.3	0.8970
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	7.7	0.9255
					Lus10036436 [exp]	8.4	0.9166
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	8.8	0.9004
					Lus10027917 [exp]	13.2	0.8804
					Lus10007097 [exp]	13.8	0.9109

Compare expression of checked genes

Lus10009481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.