Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33970 148 / 8e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT4G09950 135 / 7e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33900 117 / 3e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33870 109 / 6e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33960 105 / 1e-26 AIG1 AVRRPT2-INDUCED GENE 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33930 105 / 1e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G26820 105 / 6e-26 ATPP2-A3 phloem protein 2-A3 (.1) AT1G33830 100 / 2e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 100 / 7e-25 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33910 100 / 7e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005299 [exp] 197 / 4e-61 AT1G33970 339 / 5e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005300 [exp] 180 / 3e-54 AT1G33970 321 / 7e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10026891 [exp] 115 / 2e-31 AT2G26820 156 / 2e-45 phloem protein 2-A3 (.1) Lus10003732 [exp] 117 / 8e-31 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005301 [exp] 111 / 9e-31 AT1G33970 121 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009484 [exp] 97 / 6e-23 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003507 [exp] 88 / 2e-22 AT1G33930 82 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028023 [exp] 59 / 3e-10 AT4G09940 181 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104800 [exp] 186 / 2e-57 AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.019G077300 [exp] 176 / 9e-54 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10009482 pacid=23149744 polypeptide=Lus10009482 locus=Lus10009482.g ID=Lus10009482.BGIv1.0 annot-version=v1.0 ATGGCGAGAAATGGGATTGATGCTATCATTCTCGTCTCATCAGTGGGGAATCCCTTCACTGAAGAGGAACAATCTGCCATTCGCAATTTCCAGTCTTTGT TTGGAGCAAAGATAATAGGATACATGATTGTAGTCTTCACTGATGGGGATCGACTTGGGGATCATCTTACTTTAGACGACTATCTGGGACATGGGGCTGT CCTTGCCCTCCTAAAGGAAGTTCTAGAGCGTTGTGAGAATCGGATGGTCCTATTCGATAACCAGACCAAAGATGAAGTCAACAGAATTCAACAGGTTAAC CAGCTTATGAAGCTGGTCGACAATGTTGTTCAGAAGAATAATGGATTACCTTACACAAATTACTTATTCATTGAGATGCAGAAACAGGCAGCAATCATGC GCGATAAACAGCTCATGCTCAATTCCTTGACCTCAAAGTCTGCTGCTAATCTGGAACTGATCCATTTGAAAGAAGAAATGAACAAGAAATCTGAAGAACA ACTTAAACTTATCACTGAGACGTTTGGTGTGAAGCTGAATGAGGGGACTGCTGAGCTGAAGAAGCAGGTAGAAGCAGAGCAAGCAGTACGTTGTATGGCA GAGGAAGCTTTGAAATCGAGCGATGAAATTTGCAAGCTACGAAAGGATATAGGGAAAGCTCAGACTCTGGCTAGCGAGATAGAGGAGCTGAGGAAGCAAC TGACTGCAAAGGGTTCCTGTTCAATGCACATTATTTTGTGA
AA sequence Show only first row Show all	>Lus10009482 pacid=23149744 polypeptide=Lus10009482 locus=Lus10009482.g ID=Lus10009482.BGIv1.0 annot-version=v1.0 MARNGIDAIILVSSVGNPFTEEEQSAIRNFQSLFGAKIIGYMIVVFTDGDRLGDHLTLDDYLGHGAVLALLKEVLERCENRMVLFDNQTKDEVNRIQQVN QLMKLVDNVVQKNNGLPYTNYLFIEMQKQAAIMRDKQLMLNSLTSKSAANLELIHLKEEMNKKSEEQLKLITETFGVKLNEGTAELKKQVEAEQAVRCMA EEALKSSDEICKLRKDIGKAQTLASEIEELRKQLTAKGSCSMHIIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	2.0	0.8846
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	2.0	0.8920
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10015766 [exp]	2.4	0.8597
AT5G06440			unknown protein		Lus10016186 [exp]	3.0	0.8729
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	3.9	0.8622
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	5.7	0.8683
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	7.7	0.8319
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	8.5	0.8324
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	11.6	0.8531
AT3G27050			unknown protein		Lus10032042 [exp]	15.8	0.8304

Compare expression of checked genes

Lus10009482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.