Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26220 236 / 3e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 223 / 9e-71 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67980 201 / 1e-62 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G67990 196 / 2e-60 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24735 192 / 7e-59 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G62000 145 / 1e-40 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 132 / 1e-35 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33970 86 / 2e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT4G09930 58 / 5e-09 Avirulence induced gene (AIG1) family protein (.1) AT1G33900 56 / 1e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014074 [exp] 219 / 3e-69 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 219 / 4e-69 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 218 / 1e-68 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 218 / 2e-68 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10012913 [exp] 202 / 1e-62 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034584 [exp] 177 / 3e-53 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10003732 [exp] 172 / 5e-50 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036339 [exp] 149 / 7e-42 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021804 [exp] 114 / 9e-30 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070300 [exp] 251 / 1e-81 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G099800 [exp] 225 / 2e-71 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 222 / 2e-70 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G104400 [exp] 207 / 7e-65 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.008G136600 [exp] 207 / 1e-64 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 136 / 7e-37 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.019G077300 [exp] 99 / 5e-23 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.013G104800 [exp] 92 / 2e-20 AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10009484 pacid=23149692 polypeptide=Lus10009484 locus=Lus10009484.g ID=Lus10009484.BGIv1.0 annot-version=v1.0 ATGATTGTTCTTTTCACCGGTGCAGATGAACTTGAAGACAGTGATCAGAGTTTAGAGGATTATCTCTGTATTGATTCTGAAGGCAGCTCTCCTCTAAAGG AAGTTCTCTCGCTTTGCGACAATAGGATGATCTTGTTCAATAACAAGATCAGATATGAACTTGAGAGAGTTAATCAAGTAACTCAGCTTATGAATCTCGT AAACAGCCTCGTTGCGCAGAACGGTGGAAAACCGTTCACTAATGACATCTTCCAGATGGTGCAGAAACAGTTCGAGGCAGATTCCTTGAACTTAAAGAAG GTTGAATCTAGTCTGAAAGAACAAATGAACGAGGCTTACGAAGAACAGGAGACAACTGAAAGGATGGAGGAGCAACTGAGAGCGGAGCAAGCTGCACGTT TGAAGGCAGAGGAGGCCTCAGAGGAGGCACAGTTGAAAGCGATGGAAGAATCCCGTCAACTTCGAGTGAAGTTGGAGGGAGCTGAGTTGGACAGCAAGAA GGCTGCCTTGGAAGCTCAATCCAAAGCAATGGAAGAATCACGTCAACTTCGAGAGAAACTCGAGAGAGCAGAGATCGAGACCAAGGAGGTTAAGTACATA ATGGAAATGACCGTTTACCCAAGAGAGCCACCAATCCTGAAGGAGCTGAGAGATGCAACCTCGAAAGATCCTCGATCGCCCATGGCTTCCGATCCACACG CTTCACAGCTAATGGGGCTGCTACTGAAGATGCTGAACCCGCTCAAGACCATCGAAATCGGAGTTTATACCGGCTACTCCCTCCTCCTCACTGCCATTTC CACTCCTCCTCATGCCAAGATAACCGCCATAGACACAGAGCGAGCATGGTACGAGATCGGATTGCCTTTCATCCAAAAGGCGGGAGTTGAAGGCAAGATC GACTTCGTTCAGTCTCAAGCACTACTGGTCCTCAATAACCTCCTCCACAAGGAAGAAGCAGGGAGCTATGATTTCGCATTCGTGGATGCTGATAAGGACA ACTACATCAACTACCACGACCGGCTAATGAAGTTGATCAAGGTTGGTGGTCTTGTCGTCTATGACAACACCTTATGGGGTGGCACGGTGGCAATGTCTGA CGAGAACGACATCCCCCGCGACAAGAGAGAAGGGAAGGTGTTTGTGGATGAGTTCAACCGGAGGATTGCTTCCGACGATCGCGTGGAAATCTGCCTCGCT CCTTTAGGCGATGGACTCACTATCTGTCGTCGCATCGCTTGA
AA sequence Show only first row Show all	>Lus10009484 pacid=23149692 polypeptide=Lus10009484 locus=Lus10009484.g ID=Lus10009484.BGIv1.0 annot-version=v1.0 MIVLFTGADELEDSDQSLEDYLCIDSEGSSPLKEVLSLCDNRMILFNNKIRYELERVNQVTQLMNLVNSLVAQNGGKPFTNDIFQMVQKQFEADSLNLKK VESSLKEQMNEAYEEQETTERMEEQLRAEQAARLKAEEASEEAQLKAMEESRQLRVKLEGAELDSKKAALEAQSKAMEESRQLREKLERAEIETKEVKYI MEMTVYPREPPILKELRDATSKDPRSPMASDPHASQLMGLLLKMLNPLKTIEIGVYTGYSLLLTAISTPPHAKITAIDTERAWYEIGLPFIQKAGVEGKI DFVQSQALLVLNNLLHKEEAGSYDFAFVDADKDNYINYHDRLMKLIKVGGLVVYDNTLWGGTVAMSDENDIPRDKREGKVFVDEFNRRIASDDRVEICLA PLGDGLTICRRIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10009484 [exp]	0	1
					Lus10000359 [exp]	2.4	0.8530
AT4G10540			Subtilase family protein (.1)		Lus10031097 [exp]	5.0	0.8146
AT3G02840			ARM repeat superfamily protein...		Lus10021822 [exp]	8.1	0.7913
					Lus10016322 [exp]	9.4	0.8190
AT1G29820			Magnesium transporter CorA-lik...		Lus10004542 [exp]	13.2	0.7768
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10019318 [exp]	13.7	0.7518
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	26.6	0.8290
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	35.2	0.8143
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	41.4	0.8139
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	57.9	0.7989

Compare expression of checked genes

Lus10009484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.