Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33970 143 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT1G33930 122 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 116 / 3e-32 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT4G09940 115 / 4e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33960 107 / 1e-28 AIG1 AVRRPT2-INDUCED GENE 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33900 106 / 2e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G26820 105 / 3e-27 ATPP2-A3 phloem protein 2-A3 (.1) AT4G09950 101 / 3e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09930 96 / 3e-24 Avirulence induced gene (AIG1) family protein (.1) AT1G33890 94 / 2e-23 Avirulence induced gene (AIG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028023 [exp] 203 / 1e-66 AT4G09940 181 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003732 [exp] 162 / 9e-50 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005300 [exp] 162 / 4e-49 AT1G33970 321 / 7e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005299 [exp] 147 / 4e-43 AT1G33970 339 / 5e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10026891 [exp] 98 / 8e-26 AT2G26820 156 / 2e-45 phloem protein 2-A3 (.1) Lus10009483 [exp] 87 / 1e-22 AT1G33970 91 / 3e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10029198 [exp] 58 / 1e-11 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10025909 [exp] 55 / 2e-10 AT4G34770 116 / 3e-35 SAUR-like auxin-responsive protein family (.1) Lus10008991 [exp] 51 / 5e-09 AT4G38840 115 / 4e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077300 [exp] 167 / 7e-52 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.013G104800 [exp] 165 / 5e-51 AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.004G171600 [exp] 42 / 7e-05 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 42 / 8e-05 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.002G183400 [exp] 40 / 0.0002 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.008G225000 [exp] 40 / 0.0004 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10009485 pacid=23149695 polypeptide=Lus10009485 locus=Lus10009485.g ID=Lus10009485.BGIv1.0 annot-version=v1.0 ATGGCCATTGGATTGCCAAGTAGCCTAGCCAAGCAGATCCTCCGAAGAACTGGCTCCGGATCCTCCTCGAGGTTTCAAGATGTGCCAAAGGGAATGGGAG GATCTTCCATTGAAAACGACTGGGAGTTAACCGATCCATCTAGCGGGACGGCTCGAACAATTGTACTTATTGGTCGTACTGGTAACGGCAAAAGTGCGAC TGGCAATACCATTCTGGCGAGAAAAGCTTTCAACTCGAAATTTAGCTCGTTGGGCGTTACGAGTAGCTGTGAATTGCAGACGACTGTTTTGAATGACGGT CATGTCCTAAATGTCATTGATACTCCAGGACTGTTTGATCCTGCAATGGATTCTGAATTCGTGAGCAAGGAAATTGCAAACTGCATCAAAATGGCATGGG ACGGGATACATTGTGTGATCGTTGTTTCCTCAGTAAGGAATTGA
AA sequence Show only first row Show all	>Lus10009485 pacid=23149695 polypeptide=Lus10009485 locus=Lus10009485.g ID=Lus10009485.BGIv1.0 annot-version=v1.0 MAIGLPSSLAKQILRRTGSGSSSRFQDVPKGMGGSSIENDWELTDPSSGTARTIVLIGRTGNGKSATGNTILARKAFNSKFSSLGVTSSCELQTTVLNDG HVLNVIDTPGLFDPAMDSEFVSKEIANCIKMAWDGIHCVIVVSSVRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33970			P-loop containing nucleoside t...		Lus10009485 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	41.4	0.5366
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10022010 [exp]	88.3	0.5275
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006697 [exp]	127.9	0.4991
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	216.2	0.4679

Compare expression of checked genes

Lus10009485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.