Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 750 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 660 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G16860 402 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 392 / 3e-125 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 363 / 1e-114 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 365 / 2e-113 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 366 / 4e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 352 / 3e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 351 / 4e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 348 / 5e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003508 [exp] 655 / 0 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 475 / 3e-159 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000043 [exp] 372 / 8e-125 AT1G71490 253 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003509 [exp] 370 / 5e-124 AT1G22830 136 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033026 [exp] 382 / 5e-121 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033946 [exp] 375 / 6e-120 AT4G18750 410 / 1e-132 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 369 / 2e-116 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003790 [exp] 367 / 3e-115 AT1G17630 659 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028593 [exp] 363 / 2e-114 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 885 / 0 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 406 / 3e-130 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 397 / 2e-123 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 390 / 2e-123 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 388 / 6e-122 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 384 / 6e-121 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 384 / 2e-120 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 370 / 1e-116 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 370 / 5e-116 AT3G22690 582 / 0.0 unknown protein Potri.004G047800 [exp] 371 / 6e-115 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009487 pacid=23149706 polypeptide=Lus10009487 locus=Lus10009487.g ID=Lus10009487.BGIv1.0 annot-version=v1.0 ATGCCGCCTTCACTCAAGGGCTTGTTATCTGTAGCTGAGATACAGAAGTTCATACCAAGCAAGTGGAAGCAAATTGCAGCTACTAAGCCTGTAAATACTG TTACCGCCAAGCCTCTGGTTCGCCATAGTTATGCTTTGAAGGATGGATGCATCATGTTAAGCTTTTTAGTAATCTGCATCAAGGATCTCACAAGCCAAGG CAATCTGTGCAAGGCATTCGAAACATTTTCGTTAGTGCAACGACATGCTCGAACTCATCAAGACTCGCTCGTGGATTCGATTGCGTGTCTTTTGTTTGCT TGTGCTGATCCGAAATCATTGACGTGGCAAGGAGGAAGACAGCTCCACGGGCATATGATCTCGCTAGGGTTAGAGAAAGATCCTGTTTTGGTACCAAAGC TCGTTACTTTCTACTCGAACTTCGAGTCCTTGGTTGACATTCACGCTATTGTTGAGAATGCGAATATAATGGACCCTTTGCCTTGGAATTTGCTCATTTC TGCGTATAATAGGAATGAGCTGTATGCGAAGGCTCTTTCTGCTTATATGGAGATGAGGAGTAAAGGAGTTAGACCTGATAATTTCACTTATCCATCGGTT CTGAAGGCTTGCGGTGAACAGTCGGATTTGGCTTTTGGAAGGGAGGTTCACAGCTCCATTATAGCTAGCAGGCATCGCTGGAGTTTGTATGTGCATAATT CATTACTATCAATGTACAGTAAAACCGGGGAGCTAGAAGTTGCACGGTCTTTGTTTGACGAGATGCCGGATAGGGATTGTGTGTCTTGGAATTCCATTAT TGGCGGTTATGCTTTAAAGGGAATGTTGAAGGAAACCATCGAGCTTTTTGAAAAGATGCAGTCGGAAGTCGGTAACATAAACAACATAACGTGGAATACT GTTGCTAAATGCTGCTTGCATTCTGAAAATTTCTTAGGTGTCCTATACTTGCTATCCATAATGAGGAATTCCGATGTTCGGTTGGATTCAGGAGCGATCA TTAGTGGTTTGAAAGCATGTTCCCATATTGGAGCCCGGAAATTAGGAGCTGAGCTACATTGTTTTGCAATTCGAAATAATTATGATGGATTAGTTAATGT CAGAAATGCTCTAATTACTATGTACTCTAGATGCAAAGATCCAAGGCAAGCTTATGTGATTTTCTCTTTGATGGACACCAAGACCGTAGTTACTTGGAAC TCCATGATTTCTGGATATACCTATTTGGATCTATCTGAAGAAGCATCCTTCATATTCAGAGAGATGTTGCTTGCCAGGGTTGAACCCAATTATGTTACTA TTGCGAGCATTCTTCCGATCTGTGCTCGAATTGCAAATCTACGACATGGAAAGGAGTTCCATTCTTACATTCTAAAACGTCCAGTGTTTAAGGATTATTT ATTAATATGGAATGCGCTTGTTGAGATGTATGCCATGTCCGGGAAGCTTCCAGAAGCTAGAAAATTGTTTGATTTGATGAGCACCAAGGACAAGGTAACT TATACATCACTAATAGCTGCATATGGGAAACAGGGCTACGGGAAAACTGCACTCAAACTCTTCAAGGAAATGGACAGGCAAGAAATCACACCGGATTTTA TCACCATGGTTGAGGTTCTGTCAGCTTGTAGCCATTCCGGTCTAGTAAAAGAAGGGGAAATGCTGTTTCGAGAAATGTTTAGTGTTTACGACATCGTTCC TCGATTAGAGCATTACGATTGCATGGTGGATCTCTTTGGGAGGGCAGGGATGTTAAATCAAGCGAAGGAGATCGTGTTAACTATGCCTTACAGTCCAACA GCTGAAATATGGGCTACTCTCTTAGGAGCTTGCCGGATTCACGGAAATACAGATATAGGGGAATGGGCAGCTAATCGTTTGCTAGAGATGAAACCGGAAA ATTCGGGGTATTATGTGTTGATTGCCAACATGTATGCTGCTGCCGGAAGCTGGGATAAGCTGGCTAAAGTTCGAACCTTTATGAAGGATGTCGGTGTGAA GAAGTCTCCTGGATGTGCCTGGGTTGATGTGGGGTCCGGGTTTAGACGGTTCTTAGTAGGGGGTTGTTCTGAAGAACACGGAAGTGAACTTTATCATCTG TTGGATGAGATGACAGAGCTGATGAAAGATGTTGGTCATGATGCTGCTGATGATGTTAGCTCGGAAGATGAAGCATTACAGACATGTGTGATGAACAATC TAAGTCCAGGACAAGAAGAATCCCACGAGCTTCAAGAGAAGCTGGAGAGAGCCTTGTCGGAGAACCCGAAGGCTATCGAGGAGGCTCGGTCCGAAAAAGT AATGAAACAATACCAAAAGGAACACGAGAGAGCTGAAGAGAAACGTCGAGAGCAGAGACTGAGGTGTTTGAGCCAAGCAAGATGCACGCTAGGGAGGTCG AGGCGCTTCGCAAATGCACGCTAG
AA sequence Show only first row Show all	>Lus10009487 pacid=23149706 polypeptide=Lus10009487 locus=Lus10009487.g ID=Lus10009487.BGIv1.0 annot-version=v1.0 MPPSLKGLLSVAEIQKFIPSKWKQIAATKPVNTVTAKPLVRHSYALKDGCIMLSFLVICIKDLTSQGNLCKAFETFSLVQRHARTHQDSLVDSIACLLFA CADPKSLTWQGGRQLHGHMISLGLEKDPVLVPKLVTFYSNFESLVDIHAIVENANIMDPLPWNLLISAYNRNELYAKALSAYMEMRSKGVRPDNFTYPSV LKACGEQSDLAFGREVHSSIIASRHRWSLYVHNSLLSMYSKTGELEVARSLFDEMPDRDCVSWNSIIGGYALKGMLKETIELFEKMQSEVGNINNITWNT VAKCCLHSENFLGVLYLLSIMRNSDVRLDSGAIISGLKACSHIGARKLGAELHCFAIRNNYDGLVNVRNALITMYSRCKDPRQAYVIFSLMDTKTVVTWN SMISGYTYLDLSEEASFIFREMLLARVEPNYVTIASILPICARIANLRHGKEFHSYILKRPVFKDYLLIWNALVEMYAMSGKLPEARKLFDLMSTKDKVT YTSLIAAYGKQGYGKTALKLFKEMDRQEITPDFITMVEVLSACSHSGLVKEGEMLFREMFSVYDIVPRLEHYDCMVDLFGRAGMLNQAKEIVLTMPYSPT AEIWATLLGACRIHGNTDIGEWAANRLLEMKPENSGYYVLIANMYAAAGSWDKLAKVRTFMKDVGVKKSPGCAWVDVGSGFRRFLVGGCSEEHGSELYHL LDEMTELMKDVGHDAADDVSSEDEALQTCVMNNLSPGQEESHELQEKLERALSENPKAIEEARSEKVMKQYQKEHERAEEKRREQRLRCLSQARCTLGRS RRFANAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	7.2	0.8603
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	7.5	0.8480
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	10.6	0.8282
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	12.0	0.8256
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	13.3	0.8431
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	16.1	0.8344
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	17.7	0.8426
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	18.2	0.8407
AT1G67170			unknown protein		Lus10035371 [exp]	18.7	0.7889
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	21.0	0.8039

Compare expression of checked genes

Lus10009487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.