Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33980 167 / 5e-47 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003510 [exp] 417 / 2e-146 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2) Lus10035769 [exp] 133 / 3e-34 AT1G33980 306 / 7e-99 Smg-4/UPF3 family protein (.1.2) Lus10037346 [exp] 110 / 2e-26 AT1G33980 259 / 5e-81 Smg-4/UPF3 family protein (.1.2) Lus10027007 [exp] 73 / 5e-16 ND 41 / 8e-06 Lus10008346 [exp] 64 / 4e-12 ND / Lus10027099 [exp] 54 / 9e-08 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1) Lus10025489 [exp] 0 / 1 ND 53 / 2e-13
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077500 [exp] 177 / 2e-50 AT1G33980 321 / 3e-104 Smg-4/UPF3 family protein (.1.2) Potri.003G005700 [exp] 152 / 2e-41 AT1G33980 256 / 3e-79 Smg-4/UPF3 family protein (.1.2) Potri.004G225800 [exp] 150 / 1e-40 AT1G33980 241 / 1e-73 Smg-4/UPF3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03467 [flax] [poplar] Smg4_UPF3 Smg-4/UPF3 family
Representative CDS sequence Show only first row Show all	>Lus10009488 pacid=23149700 polypeptide=Lus10009488 locus=Lus10009488.g ID=Lus10009488.BGIv1.0 annot-version=v1.0 ATGGCGAAAGGAAATCCGAAGAAGGAAGCTTACGAGAGAACCAAAGTGGTGGTAAGGCATTTGCCGCCTTCACTCTCTCGTTCGGAGCTCTTCTCTCACT TCGATCATCTCTTCTCCGACCGGGTCAATTGGGTCTCTTTCCGACCCGGGAAGTCCAGGAACAGTCAGAATCAGAGGCATTCTCGTGCTTATATTGACTT CAAGAGCCCTGGAGATGTTTTGGAGTTTGCACAGCTCTTCAATGGCCATAGATTTGTCAATGAGAAGGGTGCTCAATGCTGTGCTGTTGTCGAATACGCC CCATCGCAGCGTGTTCCCAAGCCGTACGCTAAGGATAGTCGAGAAGGGACTTTTCTCAGAGACAGCATTGTTGTGACGCCGCTAATGGATTTTATACGCA AGAAACGAGCAGCAGAGACAGGAACCTTGATTTGCAGTTCGAAGGTCCTCCCAAAGAAGCCAAGTCGGAAGGACAAAGCTCTTGTCAATGAGGCATTAGG ACTCGAGGCGAAACCTTCCAGTTCTAGTCAGAATGAAGGTTCACAAACTAAGTCCTCTCCTAGAGTTCGAGGTCCTGCAAAGAGGTTAAATGAGACTGGT GATTCCGAAAAGAAGAAGACTTTGCATGATAAAGAACGGAAGCAGAAAACTTCACTTAACCACGGTCGTGAAGCTAGTGAAAGGATGATAAAACACATAA TCTTAAGTCGCGAATCGCGTCTAAAGAAACCTAAGAAACCTTTGACAGATGTCTATCCTCAAGAAATAGATCATCAAATGGAGCTAGGATCAACTAATTG CAGCCCACCTAAGACACCGTCTTTGGTTATGAGTGATTCTGATCAAAGAAGAAATGCTTCGGATAATCAGTTTATGAAGAAGGATAAAGCTGAGAAAAGT TCAAGGTCGCACAGGAGAAAAATGGATAAACCAAGTCGTGATATCGAGAATCCAAGACTTCCTGCTGCAGCTGCTAAAACTATGAAAGATGATGCATCCT CCATGCGTAAAGCTAAGGGGAAACCTTTGAGAAAAGGAGTTGCAACTGGAAATCCTGATTCTGAGCAAAGGTCAGGAGCTCGTCTGAAATGCTGCCTTGT TGATGCTTCGTCTCATTTCTTAAGATGCCTCGTGCTAGGAATCGGAATCTGCGAACCGGGACAGCATGATGGAAGCTGA
AA sequence Show only first row Show all	>Lus10009488 pacid=23149700 polypeptide=Lus10009488 locus=Lus10009488.g ID=Lus10009488.BGIv1.0 annot-version=v1.0 MAKGNPKKEAYERTKVVVRHLPPSLSRSELFSHFDHLFSDRVNWVSFRPGKSRNSQNQRHSRAYIDFKSPGDVLEFAQLFNGHRFVNEKGAQCCAVVEYA PSQRVPKPYAKDSREGTFLRDSIVVTPLMDFIRKKRAAETGTLICSSKVLPKKPSRKDKALVNEALGLEAKPSSSSQNEGSQTKSSPRVRGPAKRLNETG DSEKKKTLHDKERKQKTSLNHGREASERMIKHIILSRESRLKKPKKPLTDVYPQEIDHQMELGSTNCSPPKTPSLVMSDSDQRRNASDNQFMKKDKAEKS SRSHRRKMDKPSRDIENPRLPAAAAKTMKDDASSMRKAKGKPLRKGVATGNPDSEQRSGARLKCCLVDASSHFLRCLVLGIGICEPGQHDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	0	1
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	5.3	0.8265
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	13.8	0.8249
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	19.7	0.8223
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	20.6	0.8182
					Lus10028086 [exp]	21.6	0.7947
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	23.2	0.8111
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	25.0	0.8145
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	25.8	0.8191
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	28.9	0.8098
AT4G08310			unknown protein		Lus10003736 [exp]	29.1	0.8122

Compare expression of checked genes

Lus10009488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.