Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09900 378 / 2e-132 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 367 / 6e-128 ATMES14 methyl esterase 14 (.1) AT1G26360 260 / 7e-85 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G69240 258 / 7e-84 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT3G29770 249 / 2e-81 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT2G23560 150 / 4e-44 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT4G16690 150 / 5e-44 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT3G10870 149 / 1e-43 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT5G58310 148 / 1e-43 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT2G23610 146 / 1e-42 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003511 [exp] 457 / 1e-163 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10005298 [exp] 405 / 5e-143 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10030707 [exp] 259 / 7e-85 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 258 / 2e-84 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 250 / 1e-81 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 239 / 5e-74 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10022467 [exp] 157 / 7e-47 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 150 / 2e-44 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10005400 [exp] 149 / 7e-44 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104700 [exp] 390 / 4e-137 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.019G077400 [exp] 386 / 1e-135 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.008G096900 [exp] 266 / 7e-88 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.004G116500 [exp] 263 / 2e-86 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.017G096900 [exp] 261 / 4e-86 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.009G107500 [exp] 162 / 1e-48 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 161 / 2e-48 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036800 [exp] 160 / 2e-47 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G036700 [exp] 155 / 4e-46 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.019G131100 [exp] 145 / 2e-42 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10009489 pacid=23149722 polypeptide=Lus10009489 locus=Lus10009489.g ID=Lus10009489.BGIv1.0 annot-version=v1.0 ATGAAACTTGATTTTTTAACCATTTCCAACATATATGAGAAGGTTCATGAGAATCTGGAGAAGGTGAAGATAAAGACTTTTGTACTAGTACATGGAGAAG GCTTTGGTGCCTGGTGTTGGTACAAAAGTATTGCTCATTTGGAGGAAGCAGGACTAGTTCCAGTGGCCTTATATCTAACTGGATCTGGCATCGACGCAAC AGATTCGAACTGTATCAAGACATTGGCTGACTACTCGAAACCGTTGATTCGCTATCTCGAGAACCTTCCACAGGACGAAAAGGTTATTTTGGTTGGTCAC AGTACTGGAGATGCATGCATCTCTTATGCATTGGAGCTCTTCCCTGAAAAGATATCGAAAACTATTTTCGTGTGCGCCACGATGCTTGGTTCTGCTGAGC GCTTTATGAAGGAGTCACAGTTTCTGGTTCATGGGAATGGTAAGGACAATCCTCCCACAGGATTCATGTTTGAGAAGCAGCTAATGAAAAGTTTGTACTT CAATCAATCCCCAACAAAGGACATTGCACTGGCCATGGTTTCCATGAGACCTTCACCACTAGGTCCAACAATGGAGAAGCTGTCCTTGACACCAGAAAAG TACGGGGCATCTCATCGATTCTTCATTCAGACTCTCGAAGATTGTGCTCTTTCTGCGGACGTTCAGGAGAGACTGGTGAGGGAGAACCCGCCAGAAAGTG TTTTCAAGATCAAAGGAAGCGACCATTGCCCCTTCTTTATCAACCCTCACTCACTGCCAAGATTTTGGTTGAAATTGCTCAAATTGAGTAGCTAA
AA sequence Show only first row Show all	>Lus10009489 pacid=23149722 polypeptide=Lus10009489 locus=Lus10009489.g ID=Lus10009489.BGIv1.0 annot-version=v1.0 MKLDFLTISNIYEKVHENLEKVKIKTFVLVHGEGFGAWCWYKSIAHLEEAGLVPVALYLTGSGIDATDSNCIKTLADYSKPLIRYLENLPQDEKVILVGH STGDACISYALELFPEKISKTIFVCATMLGSAERFMKESQFLVHGNGKDNPPTGFMFEKQLMKSLYFNQSPTKDIALAMVSMRPSPLGPTMEKLSLTPEK YGASHRFFIQTLEDCALSADVQERLVRENPPESVFKIKGSDHCPFFINPHSLPRFWLKLLKLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	0	1
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	2.8	0.9313
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007066 [exp]	3.2	0.8891
					Lus10041941 [exp]	4.6	0.9030
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	5.3	0.9124
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	6.0	0.8989
					Lus10015488 [exp]	6.3	0.9040
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	7.1	0.9228
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	8.8	0.8577
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	9.3	0.9178
AT1G25480			Aluminium activated malate tra...		Lus10021694 [exp]	11.0	0.8733

Compare expression of checked genes

Lus10009489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.