Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11530 58 / 5e-08 EMF1 embryonic flower 1 (EMF1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011692 [exp] 2182 / 0 AT5G11530 64 / 5e-10 embryonic flower 1 (EMF1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240500 [exp] 503 / 5e-156 AT5G11530 281 / 5e-78 embryonic flower 1 (EMF1) (.1) Potri.018G039500 [exp] 435 / 8e-131 AT5G11530 187 / 7e-48 embryonic flower 1 (EMF1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009490 pacid=23147309 polypeptide=Lus10009490 locus=Lus10009490.g ID=Lus10009490.BGIv1.0 annot-version=v1.0 ATGGAGAGAAGCAACACTGATACTGTCGTGGAAGCTGGCAAGACTGATGATGTACAGAAGGCTGTGGATTCTCCAATTAAGATTAAATCAATATGCATAG AGCTCAATGCTTCAAAGGGGAATAACATTGCAGAAGACTGCAACCATTTCTCTATACGTGGATATGTATCTGAAATCCGCGAGAAAGACATCAGCAAGAG CTGGCCATTTGATTTGCCAGACATACACAATAAAAGTTGTGACGAGGATGATCGGGAGCTTCCTCCTTTAGAAGAACGGAGATTTAGATACTGGCGTTGT GAGAATTGCATGCAGAGAATAGGCCAGCCGGTTGAAACTGTAAAACATCCTGCAGTTCCTCTTAGGCCTTCTAGTTCTACATCAAAGTCTGAAAGCACTC ATTTTCCCATACCAACAGTGGATGCCTACTCATTGATCCTATTAGAAACGCTACCATCAAAGCATGTCAATGTAGATGGAAATAAAGATCGTGCTAAGAA TATTAAGCTTCACACCTCGATACATGAACGTTTGAGCACTGATAAGAGAGAAGATACAACAAATGTCTGCGGCAGCTCCACTTCAGGACAAGCTGTGGTG TCTAGGCATCATCTGAATGGTGAAATTCCTAGCTTGAGTTCTGTGGTAACCAAAATTTGTTCGAACACAATGCAGGTTACCATTCCAGCAGAAGACAGTA ATCATGAAGTAGCTGATGCTGACCCCAGAAGGAACAACGTTGATTGTATGTTCAAAAACTCTGTTGGAATTTGCGAAACAGAAAAGGAAAGCTCTAGACA TGAGCGGACCAAAGAGTCAACAGCTCATGTAAAATCTGTGGTTTCTGGACAATTTACTGATGCATGCGCTGGTAAGAAAGGTCACGCTCGTGGGCAAGAT ACGTTGGAAGGAGATGATCGCAGCTTGGTTTCCTCTGAAAGTGCTGAGATTCTGGTTAAGAATAATAACCTTCGAGGTTCTCAACATGATGGTTCAAATG GTATGCGTCGTAGAAAACCTCGAAAGATCAGATTACTGACTGACTTGTTGTGTGAAGAAAATGGAGTTGGAAATGCCGATGCCCCTAAAAAGACTGCAGA TTTACCCTCCGGTATCATAATTCCCGATGCATCTGCAGCAGTTGATAAACCTCCTGGCTTTCCGAGTCAAGTGGTTACTGAAGGAAGTGATAGAAGAAGT TTGCTTCCAAATAAGAAAAGAAAAGTTCCTCAGGATGATGAGTGGAGCATCCCTGACATGAATGCTCATAGTAGAGTGAGCAAAGAAGCCAGGACTTCAA AGAAAGCTGTTGATATCACCAAAATAAATAATGCAGCTGGCCCTTATGATGTAGTTACACAAGCGAAAGACAAAATGGTGCTACAAAGTAGCACAATAAG CAATTCTAGCAAGATTAGAAGTGAAATCAGTGCTGGCAAAGGGAAGAAGATTGTCAATATCGAGTCTGCTGTGACATCTGAATTAGCGGCAGCAGGTGTG AAATACAAAAGTAGTACAAAGAACAACTCTAACAAGACTAGAGGTGATAATAACGCTGCGGTGGGTAAGAAGAAAGATAAAAGTATATTTGTTGCTGATG AGCATATATCTCTGGCACCACCATCTTCGCAAAATTTGGCGACAGTAATTGCTTCCAGTATTGGAGATGCTTGTAAGGCAAATACCACAGATCATGCTGT ACCAAAATCCTTGAAGAATAAACATGCACGTAAAGAGATAGATCTTTTCCCGCTGCCTACTCAAACTGTTGATGAGATATCTACTTCTGCTATGAGGCAA TTCAAGTTGGGTCAAGTTGGTGACTTACAACGTCCTGACCTTCCATCAAATCTGGGAATGCTTGGAGAGGATCTATCGACACGAGAAGCTGAGACAAGGA TACTAACTTGGCGTGTTAATGGTCCAAATAAACCAATGGAAGATTTATCCAACGAAAGAGAGCTAAATCTTTCTCTTCACATTCACCCAGCTGCACATAA ATCGGAAAGGCCATTTAACCGTGTGAAGGACAAGCAAGGTGGAACAGGTAAAGACCAGGTTATGAGTGAAAATGGACAGGAACATTATCTTGGAAGACTT TCTTCGACTCATAGATCTCCAATGCTTGCACCTTATGGTGGAGTACAAAGTGATTCGAGTAGGAAGCAACCCATCATTGGACTTCCCTTCCTCGGCGGGA CCAAGAACTATAACTCACCAACTGACATGGGAGGTTCTCTTATGCATAAAAAGAACTGTCACAGTACAAGCACCCATGAGAACCCCACTGGATTTCAGAA ACATATAGCTGCTAAAATGAAGGATGTTGACCAGAGAGGTGTCAGAATATCTGAACAAGGAGCTTCAGATGACATCCCAATGGAAATTGTTGAACTTATG GCGAAGAATCAGTATGAGAGGTGTCTTCCTGATGTTCTAGCTGAGAGGTACCGCCCAGAAGCAACTAGCAGGTCCAGCAAGGGTCAGACAATGGAATTTG GCAATGTCTATGGACATTTGAACATGCACCCATATTATCCGGAAGCTTACAATGAAAAGTTACAGACTAACGATGGACGAAATGGCATAATCCATTGGGG CGAGAATGCGAGACTCACCAAACAGAAGTCAGTTGCTAAGTTTCCTCAAGCGGATCAAAACAGATTCTTCATATACGAACCAGAGCAAAGTCGTTCCCAT GGTAGCTACGGGGAATTCCAGCCCCGTCAGAAGTCCTCTAGTATGGCAAATTCTGCTTCTTCCTCCAGTGGGGATATTGGTGATCAAAGTTGGAGATTGT TTGGAGATGTATCTATGAAGAGGCAACCTCAAACTAGTTCACATCCCACAGGGCCATGGAACGTATGTCACAACATTCCACAGCAGCAGCATAAAGATTC GTATCACTTATGGAGAAATTCAGTACCCAGTCACAACTTGCCTTTCATTTATAACGTTCCCCAGAAGAATGCATCACCGACTACCCGTAGGGATGGTATA TTTCCTTGTTCAGCAAGCATGCAGAAGGCGAGTATTAACCGAGATAGTGACCCCATCGACTATCCAATCCGGAATGTTTCCAGATTTCACAAAGAAAGTA ATAGCCTTGATTTTGATATGCCAAACAAGGAACGTTTGGAGAACCAACTTACTAGCAATCATCATAATGTTGTAGAGCTTAACCAGAAGCCGACGGGAAA CTTAGATATCCCTTCGGATGAACAAATGTCAGCTATGCAACTGCTCAGCCTCATGGATGCAGGATTAAGCTCCAATAATAGACAAGTGAACCAAGATGTG GAACCTACGTTGCTCATAAGGCCTTCCACTTCTCTTGAGCAGCAGCAGCACTCAGGGATTGGTTCCACCTCGCACAAGGACAATGGTCAAACAAGATCTC TGCCATACAACAATCAATTTACTAGGGGTGTCCATACTCCCCCAGCATTTGGTTCATCATTTCAACTTGATCGAGGTTTCAGTAAGGCCATTGATTTCAC CAGGCAAGTCTCTCAGGCTACAAGTAGCAGTTTTAAAATCCCTTCAGGATCTGGTCCCAAGCAGACCATGCTTCTTGGTTCTTCAGATTCATATAGGATT CCCTTCCAAATTCCATCATCAAGGGGTTGTAAGGAACAAATGCTCGAGGCTTCTATATCAAGCAGAAGTGATCGATCATCAAAACGGAAGTTGGAGCCGG ATGTCTGCCTAACGAACAGGAACCCTGCTGATTTCAGTTATCCAGCGCCTGACAACCCTTTCATGATAGGGGCAGAAGACTTGAAGTTCCTAGATGCTGG TGTAGTAAAGCAAAAGAGGCAGAAGAAGAAGGTTGCGCCAGGAAGTAGAGGACGCATCAATCCATAA
AA sequence Show only first row Show all	>Lus10009490 pacid=23147309 polypeptide=Lus10009490 locus=Lus10009490.g ID=Lus10009490.BGIv1.0 annot-version=v1.0 MERSNTDTVVEAGKTDDVQKAVDSPIKIKSICIELNASKGNNIAEDCNHFSIRGYVSEIREKDISKSWPFDLPDIHNKSCDEDDRELPPLEERRFRYWRC ENCMQRIGQPVETVKHPAVPLRPSSSTSKSESTHFPIPTVDAYSLILLETLPSKHVNVDGNKDRAKNIKLHTSIHERLSTDKREDTTNVCGSSTSGQAVV SRHHLNGEIPSLSSVVTKICSNTMQVTIPAEDSNHEVADADPRRNNVDCMFKNSVGICETEKESSRHERTKESTAHVKSVVSGQFTDACAGKKGHARGQD TLEGDDRSLVSSESAEILVKNNNLRGSQHDGSNGMRRRKPRKIRLLTDLLCEENGVGNADAPKKTADLPSGIIIPDASAAVDKPPGFPSQVVTEGSDRRS LLPNKKRKVPQDDEWSIPDMNAHSRVSKEARTSKKAVDITKINNAAGPYDVVTQAKDKMVLQSSTISNSSKIRSEISAGKGKKIVNIESAVTSELAAAGV KYKSSTKNNSNKTRGDNNAAVGKKKDKSIFVADEHISLAPPSSQNLATVIASSIGDACKANTTDHAVPKSLKNKHARKEIDLFPLPTQTVDEISTSAMRQ FKLGQVGDLQRPDLPSNLGMLGEDLSTREAETRILTWRVNGPNKPMEDLSNERELNLSLHIHPAAHKSERPFNRVKDKQGGTGKDQVMSENGQEHYLGRL SSTHRSPMLAPYGGVQSDSSRKQPIIGLPFLGGTKNYNSPTDMGGSLMHKKNCHSTSTHENPTGFQKHIAAKMKDVDQRGVRISEQGASDDIPMEIVELM AKNQYERCLPDVLAERYRPEATSRSSKGQTMEFGNVYGHLNMHPYYPEAYNEKLQTNDGRNGIIHWGENARLTKQKSVAKFPQADQNRFFIYEPEQSRSH GSYGEFQPRQKSSSMANSASSSSGDIGDQSWRLFGDVSMKRQPQTSSHPTGPWNVCHNIPQQQHKDSYHLWRNSVPSHNLPFIYNVPQKNASPTTRRDGI FPCSASMQKASINRDSDPIDYPIRNVSRFHKESNSLDFDMPNKERLENQLTSNHHNVVELNQKPTGNLDIPSDEQMSAMQLLSLMDAGLSSNNRQVNQDV EPTLLIRPSTSLEQQQHSGIGSTSHKDNGQTRSLPYNNQFTRGVHTPPAFGSSFQLDRGFSKAIDFTRQVSQATSSSFKIPSGSGPKQTMLLGSSDSYRI PFQIPSSRGCKEQMLEASISSRSDRSSKRKLEPDVCLTNRNPADFSYPAPDNPFMIGAEDLKFLDAGVVKQKRQKKKVAPGSRGRINP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	0	1
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	1.0	0.9601
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	2.0	0.9556
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	3.5	0.9279
					Lus10005872 [exp]	6.7	0.9464
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	6.9	0.9163
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	6.9	0.9440
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	7.4	0.9310
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	8.4	0.9318
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10037411 [exp]	8.9	0.8837
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	10.2	0.9413

Compare expression of checked genes

Lus10009490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.