Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 250 / 2e-74 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 241 / 4e-71 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 236 / 2e-70 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 112 / 9e-27 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 104 / 3e-23 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 103 / 1e-22 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 102 / 3e-22 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 95 / 5e-20 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011693 [exp] 896 / 0 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 256 / 1e-76 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 226 / 2e-65 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 207 / 4e-58 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 113 / 1e-25 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 108 / 3e-24 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 84 / 2e-16 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 84 / 2e-16 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039300 [exp] 315 / 3e-98 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 260 / 5e-78 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 216 / 2e-63 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 180 / 2e-49 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G251200 [exp] 112 / 2e-25 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.010G083400 [exp] 105 / 2e-23 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 105 / 3e-23 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 105 / 3e-23 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 104 / 7e-23 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 87 / 2e-17 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10009494 pacid=23147314 polypeptide=Lus10009494 locus=Lus10009494.g ID=Lus10009494.BGIv1.0 annot-version=v1.0 ATGGAGCAAGGAGAGACCGTTTCAGATTTTGCACCGAAGAAATTGGCGCGGCAACTTGATTTCACTGCTGTTTGTAGAGCGTCAGTCAATGTGGCCGTTC CAGAGCATCACTCTCAGCTGCTTCAGCAAGCATCGTCGACACCGCCTTCGCCGTCAGCTCGGCAACAACAACAGTCGTTGCAGCCAATGCTACAATTTCA TCTGCAGTTACAAACACCTCCGTCAAAGCGGACTCCAAAGCCGCCGCGAGATCAATCTCGAGAACTTGCTGGAGCAGGTGCGGAATTACGTTTACATCTG CAGACACCGGCTCCGCCACTGAATCAGTCCCATTCAGAGCCGCTAGCTCAGCCAACCAAGGTAATGCCACAGTTACAAGCAAGGTCGCAGCAAATGTCGG CGGTACATCGGATCCCCCACCCTGTGCATAAACTGCCGCTGCCTGCGATGCTGCCTGCCAAGCAAGAATCTCCCAGAGCACATCCGAAGGTTGACCCCGA AGCAAAAGATGTTACTGTTACCCCTAATAAACCAAAGCAATGCAATTGCAAAAATTCTCGGTGCTTGAAGCTGTATTGTGAATGCTTTGCTGCTGGAATA TATTGCAATGGCTGCAACTGTGTCAACTGCCACAATAATTTGGAAAGTGAGGGTACTAGGCAAGATGCTATTGGAATAATCTTGGACCGTAATCCATATG CGTTTAAACCAAAGATTGCTAGCAGCCCTCAAGGATCTAGTGCCAGTGAAAGTCCAGGAGTAGTACAAATGATTGGAAAGCATAACAAAGGGTGTCACTG TAAGAAATCAGGCTGTCTAAAGAAGTACTGTGAGTGCTTTCAAGCAAACATTTTGTGCTCCGAGAACTGCAGGTGCATGGACTGTAAAAATTTCGAAGGA AGTAAAGAAAGAAAGGCTATCTACTTTGGAAATTCTAGTGGCAGTATTTATGTTCAACAAGCTGCAAATGCTGCCATCAATGGAGCCATTGGATCATCAG GCTATGGGATTGCACCGTCATCAAAGAAAAGAAAGAGTAACAATATACATGATAATGGGAATAAAGATTCAAGTTTGAGTTTTAGTTTGAAGTTTCAGAA GGAAAATCACCTTAATGGTACCACCTCTGCATTGCCTGAACCGAGACTGCGTACTACCAGTTCATCCCTGTTGGGATCTTCAAATTTGACATACAGGTCC CCATTGTCAGGCATAATTCAACCACAACATGTTAAGGAGATGTGTTCGCTCTTGGTGGTACTTTCAAGAGAAGCTGGAAAGGAAATTGCAGGTAGCAAAG GGAAAACGGATAAACAACCCAAAGGACGAAAGGTTGAGAATTCTTCTGCTTCACTCATTCAAGAGAGACAACACAGTTTGACGCTTAATGTCCAGGACAA TTGTCTTGATGATAGCTTTAAGGAGACGACAAACGAAAGAGAGAGGAAAACCGATTCCTTGGCAAGCAGAGACAGGTTGGAAAATGGAAGACTGCCCTTT CCTGAGATTGATCTCATGTGCCACGAGCAAGAGTTGGACTTCCCAAAACCTGAGTCACCAACGCTTGAGCCAGCAGTTTGTCGACATGAAACCAAAGAAG CATCATCCAGTAGCCCTGATTTCTCCGAGGTCTATGCGGAGCAGGAAAGGCTAGTCTTGACTGGTTTTAGGGACTTCCTAACTAGAGTCATCACTTGTGG AAGCATAAAAGGTTCTACTTCTGATCTCCGGATCTTCACTCGTCATGCCTGTCAGACATCCCATGTTTGGTTTTACATCCTGACATCAAAAACAGCTTCT AATTTTGCAGAAACAATGCATTCTTCACCGGGAAAACCTAAAGCTGTAAATGGTATGAGCATTCTCCACAATCCTTATAGTAATGGCGTCATGAGATCTC CAGTCTACAAGACTTCTGCACAAGTTAGAGCTGCAGCATCTCCCGCGAACGGTAGGATACAGTATCCCAATGGCCATAACTGA
AA sequence Show only first row Show all	>Lus10009494 pacid=23147314 polypeptide=Lus10009494 locus=Lus10009494.g ID=Lus10009494.BGIv1.0 annot-version=v1.0 MEQGETVSDFAPKKLARQLDFTAVCRASVNVAVPEHHSQLLQQASSTPPSPSARQQQQSLQPMLQFHLQLQTPPSKRTPKPPRDQSRELAGAGAELRLHL QTPAPPLNQSHSEPLAQPTKVMPQLQARSQQMSAVHRIPHPVHKLPLPAMLPAKQESPRAHPKVDPEAKDVTVTPNKPKQCNCKNSRCLKLYCECFAAGI YCNGCNCVNCHNNLESEGTRQDAIGIILDRNPYAFKPKIASSPQGSSASESPGVVQMIGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEG SKERKAIYFGNSSGSIYVQQAANAAINGAIGSSGYGIAPSSKKRKSNNIHDNGNKDSSLSFSLKFQKENHLNGTTSALPEPRLRTTSSSLLGSSNLTYRS PLSGIIQPQHVKEMCSLLVVLSREAGKEIAGSKGKTDKQPKGRKVENSSASLIQERQHSLTLNVQDNCLDDSFKETTNERERKTDSLASRDRLENGRLPF PEIDLMCHEQELDFPKPESPTLEPAVCRHETKEASSSSPDFSEVYAEQERLVLTGFRDFLTRVITCGSIKGSTSDLRIFTRHACQTSHVWFYILTSKTAS NFAETMHSSPGKPKAVNGMSILHNPYSNGVMRSPVYKTSAQVRAAASPANGRIQYPNGHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10009494 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	1.4	0.9347
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	1.4	0.9473
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10012940 [exp]	10.2	0.8508
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	16.3	0.9089
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	16.5	0.9049
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	17.0	0.8736
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	18.4	0.8392
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10004489 [exp]	23.7	0.8817
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	29.1	0.8918
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	31.7	0.8878

Compare expression of checked genes

Lus10009494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.