Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25760 271 / 7e-93 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT5G62540 115 / 1e-31 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G14400 114 / 3e-31 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 113 / 6e-31 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G16890 112 / 1e-30 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G78870 112 / 1e-30 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT2G16740 112 / 2e-30 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G53300 111 / 4e-30 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G64230 110 / 6e-30 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G41700 110 / 9e-30 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011695 [exp] 263 / 4e-86 AT5G25760 253 / 3e-84 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10017654 [exp] 115 / 1e-31 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 115 / 1e-31 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10036727 [exp] 114 / 4e-31 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 114 / 4e-31 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 113 / 6e-31 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 113 / 6e-31 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10027846 [exp] 111 / 4e-30 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 110 / 1e-29 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240900 [exp] 275 / 2e-94 AT5G25760 315 / 2e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.018G039200 [exp] 272 / 5e-93 AT5G25760 314 / 5e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.011G111400 [exp] 112 / 1e-30 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 112 / 1e-30 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.015G064000 [exp] 112 / 1e-30 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.013G064400 [exp] 112 / 1e-30 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 112 / 1e-30 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G168200 [exp] 111 / 3e-30 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G471200 [exp] 111 / 3e-30 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.015G103400 [exp] 111 / 9e-30 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10009495 pacid=23147322 polypeptide=Lus10009495 locus=Lus10009495.g ID=Lus10009495.BGIv1.0 annot-version=v1.0 ATGCAGGCTTCTAGGGCGAGGCTGTTCAAGGAGTACAAAGAGGTGCAGAGAGAGAAAGTTGTTGATCCAGATATCCAGTTGGTTTGTGATGATTCCAACA TTTTTAAATGGACTGCTCTTATCAAGGGGCCTTCAGAGACTCCATTTGAAGGCGGAGTCTTCCAGCTTGCCTTTTCTGTGCCTGAGCAGTATCCCTTGCA ACCTCCACAAGTCCGGTTCTTGACCAAAATATTCCACCCGAATGTGCATTTCAAGACAGGGGAGATCTGTCTGGACATCTTAAAGAATGCATGGAGTCCT GCATGGACTCTTCAGTCAGTTTGTAGGGCTATAATTGCTCTTATGGCTCATCCTGAGCCTGATAGCCCTCTCAACTGTGATTCAGGCACCTTGAGGAGAT GTGCCTCACGTGTGGCCGCTACCTGCACAAAAACATCTACCTCTATGGATACGGAGGCTGTTCTAACTCTATCGCCGCCGACCATTGTTAAACATTCTAA GAACATTGGAGAATGGATGATAGGAGGTACCCAGAACCGACGTAAGCGACCACCGGCACCGGTGAAGCTGCGACCACTGGCACTGGAGAAGTCGGCGCCA AACATGCTGACGGGAGCCCCTGGCTTGCGCATTGATTTTTTGTCTAATCAACAAGAGGAGTCGACACCTCAGAAACATCAATCAAAGCCACCAAAGGTGA AGCTGCAACAACCGGCCCCTACCGGGGTGAAACCACAGGCGAAGAAGAAGACCTCCTCTTCTCGTCCCCAACCTGCCGCACCTAGGGCTCCAGTGAAGGG CGCATCGACCTCTCCTAGCTCAGAATCGGTGAATACTACGTCCAGTATAGATAAAACCACAATACAATCATGA
AA sequence Show only first row Show all	>Lus10009495 pacid=23147322 polypeptide=Lus10009495 locus=Lus10009495.g ID=Lus10009495.BGIv1.0 annot-version=v1.0 MQASRARLFKEYKEVQREKVVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSP AWTLQSVCRAIIALMAHPEPDSPLNCDSGTLRRCASRVAATCTKTSTSMDTEAVLTLSPPTIVKHSKNIGEWMIGGTQNRRKRPPAPVKLRPLALEKSAP NMLTGAPGLRIDFLSNQQEESTPQKHQSKPPKVKLQQPAPTGVKPQAKKKTSSSRPQPAAPRAPVKGASTSPSSESVNTTSSIDKTTIQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	0	1
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	2.4	0.8290
AT5G11500			unknown protein		Lus10038625 [exp]	7.6	0.8197
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	10.0	0.8037
					Lus10009043 [exp]	10.6	0.7832
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10008135 [exp]	12.2	0.7280
AT3G04780			Protein of unknown function (D...		Lus10001780 [exp]	14.3	0.8127
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	14.7	0.7988
AT1G07170			PHF5-like protein (.1.2.3)		Lus10018253 [exp]	15.6	0.7867
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	16.4	0.7893
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	16.6	0.8194

Compare expression of checked genes

Lus10009495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.