Plant FIBer expression Database

Lus10009501 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32770 691 / 0 ATSDX1, VTE1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011696
[exp]
944 / 0 AT4G32770 700 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G040200
[exp]
712 / 0 AT4G32770 675 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Potri.006G240100
[exp]
322 / 2e-107 AT4G32770 308 / 2e-102 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
PFAM info
Representative CDS sequence
>Lus10009501 pacid=23147316 polypeptide=Lus10009501 locus=Lus10009501.g ID=Lus10009501.BGIv1.0 annot-version=v1.0
ATGGAGACGACCACCATCAATTCCTCCGCCTTCTCCTCTATCTCCGACCCAGTACCCCATCTCTCCTCCGCCAACAAACCACTCCAAGTTCACTTCTCCA
GTCCCCAACGCCGCCTACTTCCGGAACTATCGATGCACAAAAAACGCCCGTGCAGTTTCAGTTTGATGGCCGCCCAAACAACCTCCGCGAGTGAAACCGC
TACCCCGAATTCAGGGAACACCACAAACGCCGCCTCCCCCTCTTCCTCCGTTTCTCCTGTTTACGTCCCCACGCCCCGCAACCGCGAGCTTCGGACTCCT
CATAGCGGGTACCATTTCGACGGGACGACGAGGAAATTCTTCGAGGGATGGTACTTTAAGGTATCGATTCCGGAGAGGAGGCAAAGCTTCTGTTTCATGT
ACTCGGTGGAGAATCCGGTGTTCTCTAAGAAACTCTCACCGTTAGAAATGCTCCAGTACGGTACTCGATCCACCGGCGTTGGTGCTCAAATTCTTGGTGC
TTATGATAAGTACATTTGCCAGTACTCTGAAGAGTCTAACAACTTTTGGGGAAGTAGGCATGAGCTAGTATTGGGGAGTACTTTTGTTGCCCAGAAAGGC
ATCCGGCCTCCAACCAAGGAGGTTCCTCCTGAGGAATTTGATAGAAGAGTCGTAGAAGGTTTTCAGACAACCCCGGTCTGGCATCAAGGTTCTATTACTG
ACAATGGCAGGACTGATTATGCGGAGACTGTAAAGACAGCACGATGGGAGTATAGTACTCGGCCTGTATATGGATGGGGCGATGTAGGGTCAAAGCAGAA
GTCCACTGCAAGCTGGCCTGCAGCTTTTCCTGTGTTTGAACCCCATTGGCAAATATGCATGGCAGGCGGACTTTCAACAGGTTGGATAGAATGGGGTGGT
GAAAGGTTTGAGTTTAAAGACGCCCCTTCATATTCAGAAAAGAATTGGGGTGGTGGCTTCCCCAGAAAATGGTTTTGGGTTCAATGTAATGTGTTCGAAG
GTGCTATTGGAGAAGTAGCTTTAACCTGTGGTGGTGGGTTGAGACAATTGCCTGGTCCAGGAGAGGTTTTTGAGAATGCTGCATTGATTGGGGTACACCA
CAATGGAGTGTTCCACGAGTTTGTGCCTTGGAATGGTGTTGTGAATTGGGAGATTTCTCCATGGGGTTACTGGTACTTGACTGCAGAGAACGAGACACAC
TTGGTGGAGCTGGTGGCTACAGCAGACGATCCAGGAACAACATTACGTGCTCCAACCTCAGAGTCGGGTTTGGCTCCAGCATGTAAAGATACTTGCTTTG
GTAACCTAAAACTGCAAATATGGGAACGTAGATATGACGGTTCCAAGGGGAAGGTCATATTGGAGGTCACAAGCAATATGGCAGCCCTAGAAGTTGGAGG
AGGACCGTGGTTCAACACATGGAAAGGCAAGACGTCACTACCTGAGATTGCCAGCCGTGCTCTTCGTGCTCCCATTGACATGGAAGGAATTTTGGGTTCG
ATTCCATTTCTAAAACCCCCTGGTTTGTAA
AA sequence
>Lus10009501 pacid=23147316 polypeptide=Lus10009501 locus=Lus10009501.g ID=Lus10009501.BGIv1.0 annot-version=v1.0
METTTINSSAFSSISDPVPHLSSANKPLQVHFSSPQRRLLPELSMHKKRPCSFSLMAAQTTSASETATPNSGNTTNAASPSSSVSPVYVPTPRNRELRTP
HSGYHFDGTTRKFFEGWYFKVSIPERRQSFCFMYSVENPVFSKKLSPLEMLQYGTRSTGVGAQILGAYDKYICQYSEESNNFWGSRHELVLGSTFVAQKG
IRPPTKEVPPEEFDRRVVEGFQTTPVWHQGSITDNGRTDYAETVKTARWEYSTRPVYGWGDVGSKQKSTASWPAAFPVFEPHWQICMAGGLSTGWIEWGG
ERFEFKDAPSYSEKNWGGGFPRKWFWVQCNVFEGAIGEVALTCGGGLRQLPGPGEVFENAALIGVHHNGVFHEFVPWNGVVNWEISPWGYWYLTAENETH
LVELVATADDPGTTLRAPTSESGLAPACKDTCFGNLKLQIWERRYDGSKGKVILEVTSNMAALEVGGGPWFNTWKGKTSLPEIASRALRAPIDMEGILGS
IPFLKPPGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Lus10009501
[exp]
0 1
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Lus10011696
[exp]
1.0 0.8185
AT1G03905 ABCI19 ATP-binding cassette I19, P-lo... Lus10024914
[exp]
2.0 0.8154
AT2G38840 Guanylate-binding family prote... Lus10024841
[exp]
4.6 0.7940
AT1G08510 FATB fatty acyl-ACP thioesterases B... Lus10017751
[exp]
6.0 0.7712
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10037836
[exp]
8.9 0.7744
AT5G07830 ATGUS2 glucuronidase 2 (.1) Lus10021652
[exp]
10.7 0.7233
AT5G19010 ATMPK16 mitogen-activated protein kina... Lus10021945
[exp]
11.2 0.7583
AT5G19010 ATMPK16 mitogen-activated protein kina... Lus10041234
[exp]
12.2 0.7542
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Lus10016003
[exp]
12.3 0.7839
AT2G02860 ATSUT2, ATSUC3,... ARABIDOPSIS THALIANA SUCROSE T... Lus10030492
[exp]
13.6 0.7603

Lus10009501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.