Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 278 / 5e-86 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 155 / 1e-40 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 92 / 3e-19 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 74 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011697 [exp] 887 / 0 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 682 / 0 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10014518 [exp] 519 / 2e-178 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 510 / 6e-177 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 499 / 1e-170 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10004841 [exp] 239 / 1e-76 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10039617 [exp] 156 / 4e-40 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 149 / 1e-37 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 75 / 6e-14 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290600 [exp] 483 / 8e-165 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 459 / 2e-155 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 457 / 1e-154 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 449 / 4e-151 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.005G068700 [exp] 148 / 1e-37 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 144 / 3e-36 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291033 [exp] 119 / 5e-31 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 108 / 1e-24 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G074700 [exp] 100 / 5e-22 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291166 [exp] 82 / 4e-19 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10009502 pacid=23147328 polypeptide=Lus10009502 locus=Lus10009502.g ID=Lus10009502.BGIv1.0 annot-version=v1.0 ATGGCCCAGAAGCCTCATTTATTCAACAGTGGGTTGGAATTGGGAAGCTCAATAGTGGAGTCGGAATTGCTGGAGCAATCATGGAGTTCCATCTGGAGCC TTTATGCAGAAGTCAATCCCAATGATCCACATCAGCAGCAGCAAGTAAACTTCAAGGTTTTCAAGCAACCAAACCTAACAATCATAGCTTTTGTGACTTC ACCCATTTATTCCCCACAAGTTCAAGATCCAGATTTCGTTTCATCAGAAACTTTAAAGCAGCACAACTTCACCCATCTTCATTTCTTGTGCTCCACTGGA AATCCTTCCTTCTCCTTCCACAAAGATGCTGTTTCTGGGTTTGCTTCTCTTTTCACCTCCCTCCGGCCTTCCGCTACCCAGCTTCTTGTTTCGCGGGAAG GTGAAACAGTTCTGGAATCCCCAGTGATAGTGACTGGACATTCCCTTGGAGGGTCGATAGCTTCACTCTTCACACTATGGCTGTTGGACACCCTAAGTCA ACTGCCATCTAAAAAACCATCAAAGAAGCTTCCACTGTTCTGCATAACATTTGGGTCACCTCTCATTGGGGACAAAGGCGTCTATGGTGGCATTTCTCAG CGCTCCACGTGGAACTCTTACTTCCTACATGTTGTCTCAAGCCAAGATCCTCTCCCAACCCTTTTTTTAGGCTCATCACCACCACTACTTCGCAACCCTC GGCAGCATTACTACTACAAGCCATTTGGCACATTTCTGCTGACTTCTGAGCTGGGATGTGCCTGCGTTGAGGACCCAGATGTAGTTTCATTACTGTTGTC CCATAAAGCAGTGGAATTTGAGGAAGAAGCTTCCAATTTGGTTTCTATTCCTGTTCAACATTATGGGTTCATGGTGCAACATCTCAAGATTAGAGCTTTG TGCCAGGGAAGCTCACTACTTGGTACACAATTTGAAGATTCACTCCAGGCTGGGACTGTATTATTGCTTGAAGCTATTGGGATTACTCGCGACCAGCAGG TGCAGCAATTGCAGAACATGGTGAACCTGGCTGAAAAGACCAAAGAGATGTTGTTGTTGTCAATGCGTAACAAAAAGAATGCAATGGAACCGAGCAGGAA ACTAAACGAGATAAAGATAAAAGTGGTGCTCCTAGGAAGATACAAACAGGAATGCAGGAAAAAGGGAGTAGGTTACTACGACAGTTACAAGAACCAATGG ACTACAGCCGACATAGACATAGCAAGGCACAAGAAACACCTGACCAACTACTGGAAACAAATGGTGGAAGAAGCTGAGAAGAAGCCTCAAAAGGAAGGCT CCCACGTCCGGGTTTCGTGGCTATATGGAGGAACTACTTACAGAAGAATGGTTGAGCCACTTGACATTGCTGATTTCTATAGAAGCGGGAATGGGAACAA AAGGGATTACAAGAATCAAGGAAGATCCAAGCATTACATCTTGCTAGAGAAGTGGCTGCAGGAAGATAATAGTGCTGCTGGTAAGCTGGGAAGCAGCAGC ATGAAGAACAATAAGAAGAACCGTGTCGCTGACTTTACAGAGGATTCCTGTTTCTGGGCTAATGTGGAAGAGGCGAGGATATCGTGCAGGTTGTTGAAGG TTCCGACAACAAGTGAGGGAGAAAAGAGATTATCAGAGGGTTATTTGCTATGGTTTGAAGATTATGTGATGGAGCTGATCAGGAATAATACTGCAGACCC TGAGATATTTATGGGAAAGAGCAGTTTCATGAAATGGTGGGCAGAGTTTCGGGAGATTGTGGGGAATAATCATACTTCCTCTCTGGCCGGGTTCATGAGG AGCAGCTTCTACCGTCGCTATGGTTCTGAACAGGACTGCTAA
AA sequence Show only first row Show all	>Lus10009502 pacid=23147328 polypeptide=Lus10009502 locus=Lus10009502.g ID=Lus10009502.BGIv1.0 annot-version=v1.0 MAQKPHLFNSGLELGSSIVESELLEQSWSSIWSLYAEVNPNDPHQQQQVNFKVFKQPNLTIIAFVTSPIYSPQVQDPDFVSSETLKQHNFTHLHFLCSTG NPSFSFHKDAVSGFASLFTSLRPSATQLLVSREGETVLESPVIVTGHSLGGSIASLFTLWLLDTLSQLPSKKPSKKLPLFCITFGSPLIGDKGVYGGISQ RSTWNSYFLHVVSSQDPLPTLFLGSSPPLLRNPRQHYYYKPFGTFLLTSELGCACVEDPDVVSLLLSHKAVEFEEEASNLVSIPVQHYGFMVQHLKIRAL CQGSSLLGTQFEDSLQAGTVLLLEAIGITRDQQVQQLQNMVNLAEKTKEMLLLSMRNKKNAMEPSRKLNEIKIKVVLLGRYKQECRKKGVGYYDSYKNQW TTADIDIARHKKHLTNYWKQMVEEAEKKPQKEGSHVRVSWLYGGTTYRRMVEPLDIADFYRSGNGNKRDYKNQGRSKHYILLEKWLQEDNSAAGKLGSSS MKNNKKNRVADFTEDSCFWANVEEARISCRLLKVPTTSEGEKRLSEGYLLWFEDYVMELIRNNTADPEIFMGKSSFMKWWAEFREIVGNNHTSSLAGFMR SSFYRRYGSEQDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	0	1
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	2.2	0.9147
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	3.5	0.8820
AT1G11050			Protein kinase superfamily pro...		Lus10018861 [exp]	6.2	0.8447
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	7.2	0.8902
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	7.6	0.9110
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	11.5	0.8792
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	11.6	0.9043
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	12.2	0.8709
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	12.3	0.8297
AT5G10710			unknown protein		Lus10026945 [exp]	12.8	0.8103

Compare expression of checked genes

Lus10009502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.