Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 164 / 1e-44 Plant protein of unknown function (DUF247) (.1) AT3G50140 76 / 3e-14 Plant protein of unknown function (DUF247) (.1) AT3G50130 75 / 3e-14 Plant protein of unknown function (DUF247) (.1) AT1G67150 69 / 3e-12 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50120 69 / 3e-12 Plant protein of unknown function (DUF247) (.1) AT3G50170 67 / 2e-11 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50180 65 / 5e-11 Plant protein of unknown function (DUF247) (.1) AT3G50150 64 / 8e-11 Plant protein of unknown function (DUF247) (.1) AT3G47200 56 / 5e-08 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50190 53 / 3e-07 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026964 [exp] 334 / 2e-109 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 228 / 1e-68 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 175 / 2e-48 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 150 / 8e-39 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 142 / 5e-36 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 127 / 2e-31 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 97 / 4e-21 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 94 / 3e-20 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 79 / 3e-15 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024100 [exp] 163 / 4e-44 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 162 / 1e-43 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.009G085300 [exp] 133 / 2e-33 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 125 / 7e-31 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 116 / 1e-27 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 112 / 3e-26 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 110 / 8e-26 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 95 / 2e-20 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.001G017600 [exp] 75 / 4e-14 AT4G31980 229 / 3e-68 unknown protein Potri.003G181600 [exp] 71 / 4e-13 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10009504 pacid=23147325 polypeptide=Lus10009504 locus=Lus10009504.g ID=Lus10009504.BGIv1.0 annot-version=v1.0 ATGGCTTCCCACAATTCCACAATTATCAATTCCAAATTCACAGAGAAAGACTGGATCATCCACATTGAAACCACCGTCGACAATCTTGACCTCCACACAT TTGCCCAATCACCTCCCTCCATCTTCCACGTCCCGGAGTCCGTCCGAATCCGAGATCGACAGTCCTTCTCCCCGCGAATTCTCGCTCTGGGTCCCTTCCA CCACTGGTCCCCTGACCTCTACCAGCTCCAGACTTACAAGCTAGCCGCCGCCAAGAGGGCCCACAACAAACTCCATTTCTCCGCCGAGTTCAAAGAGTTC GCCCGCCAACTCGCCCAACTCGCATCCGACCTTCGCCCCTGCTACGACCGCCACCTGTCCATGAGCGACGCCGCTCTCGCCTGGATTATGGCCGTTGACG GCATGTTCCTGCTCGATTTACTCTACTTTGATTTTGAAGATGCAATCCCGTCGTCTGACGGCAAGATCGGCAGGCTCGCCGTTCTCAGAGACGTCCTCTT GCTGGAGAATCAAATCCCGATGCTGCTGCTCAATAAGATTTTATCCGATTTCAGCGGTGAAGGATCGATTACCGCGACGGGTCAGTCTTTGATTTCTGTG TCACTCGATCTCTGCAGAAGGGTCTCTCCTCTTGATCTGCCCGACCCGGATCCTGCGTACCGATCCGAGAATCCGCCCCGGCATTTGTTGGATCTTTTCT ATCGTCTGCTACTTTGGGCTAAAGAGAAGCCCAAAACCAAATCGGTGGAAGTCCTCGAAGAAATCCCGACGAAGAAGAAAGTCAATTGCGTCCGCAATGC CTCCAAGAATCTCCGGCTGAGGATTTTGGGCTGGTTACGGAAGGTTTCAGAAGACGATTCCGCCGCGGTTTCGCTGATCCCAACGGCGACCCAGCTCCGA AACGCTGGGGTGATATTTAGCGTCGCCGAATATGGCGGCGTTTCGGGGATAGACTTCGATTCGCGCACCAAAACGCTCAGCCTTCCGTCGTTTACATGGA AGCATAACTGCGACGTCGCTTTGAGAAACTTGGTGGCGTACGAAGCAGCGGCCAAGCCGGAGCAACCTGTTCTAGCAAGATACGTGGATCTGATGAACGG GATGTTACAGAACACAGACGACGCCAAAGTGCTGGAAGAGGAAGGGATTATCATCGGCGGAAGAGAGGGAACGGGGGAAGTGTTCGGCCGCGGGATGGGA TTTCAGAACGGTAATTACTCGACAATGATGGACGGAACGATTGAAGCAGTTAATGAATTCTATAAGAAAAACAGGAGGATCGAGGTGGGGAAGACGGTGA AGAGGTACTTGCGGCGGTTGACGGAAGTGGGGACATTTGTGGCAGCGCTGTTTCTGTTGATTTTCTTTTGCCTGCAGGTTGTTTTGGGGATTTTCCAAGC AGGAAGTTGGGGTGTACCCGTCACAACTAGTCCGGCGACGGAGATTCCTATGAATTTGCCGTCGAATTTCGGTGCTTCTTTTTTGGCAGAATAA
AA sequence Show only first row Show all	>Lus10009504 pacid=23147325 polypeptide=Lus10009504 locus=Lus10009504.g ID=Lus10009504.BGIv1.0 annot-version=v1.0 MASHNSTIINSKFTEKDWIIHIETTVDNLDLHTFAQSPPSIFHVPESVRIRDRQSFSPRILALGPFHHWSPDLYQLQTYKLAAAKRAHNKLHFSAEFKEF ARQLAQLASDLRPCYDRHLSMSDAALAWIMAVDGMFLLDLLYFDFEDAIPSSDGKIGRLAVLRDVLLLENQIPMLLLNKILSDFSGEGSITATGQSLISV SLDLCRRVSPLDLPDPDPAYRSENPPRHLLDLFYRLLLWAKEKPKTKSVEVLEEIPTKKKVNCVRNASKNLRLRILGWLRKVSEDDSAAVSLIPTATQLR NAGVIFSVAEYGGVSGIDFDSRTKTLSLPSFTWKHNCDVALRNLVAYEAAAKPEQPVLARYVDLMNGMLQNTDDAKVLEEEGIIIGGREGTGEVFGRGMG FQNGNYSTMMDGTIEAVNEFYKKNRRIEVGKTVKRYLRRLTEVGTFVAALFLLIFFCLQVVLGIFQAGSWGVPVTTSPATEIPMNLPSNFGASFLAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006233 [exp]	1.4	0.8750
					Lus10012740 [exp]	3.0	0.8565
AT5G65490			unknown protein		Lus10002654 [exp]	8.1	0.8358
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	8.5	0.8567
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	9.5	0.8423
AT4G19950			unknown protein		Lus10018322 [exp]	10.6	0.8337
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	13.0	0.8343
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	15.9	0.8145
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	19.3	0.7767
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	23.9	0.7962

Compare expression of checked genes

Lus10009504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.