Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 207 / 1e-63 Major facilitator superfamily protein (.1) AT3G16180 197 / 5e-60 Major facilitator superfamily protein (.1) AT5G11570 147 / 1e-41 Major facilitator superfamily protein (.1) AT1G69870 146 / 1e-40 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 139 / 4e-38 NRT1.6 nitrate transporter 1.6 (.1) AT1G18880 132 / 1e-35 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G01180 127 / 6e-34 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G46050 127 / 9e-34 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT3G54140 126 / 1e-33 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G33440 125 / 3e-33 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038615 [exp] 204 / 2e-65 AT1G27080 146 / 8e-40 nitrate transporter 1.6 (.1) Lus10035860 [exp] 186 / 1e-55 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 171 / 8e-50 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 163 / 6e-47 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 141 / 6e-39 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 139 / 1e-38 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10036705 [exp] 139 / 4e-38 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10037221 [exp] 138 / 1e-37 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 136 / 4e-37 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041800 [exp] 214 / 3e-66 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 213 / 1e-65 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 204 / 1e-62 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 204 / 2e-62 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 204 / 2e-62 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 201 / 2e-61 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 201 / 3e-61 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 182 / 2e-54 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 167 / 2e-48 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 145 / 2e-40 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10009505 pacid=23147327 polypeptide=Lus10009505 locus=Lus10009505.g ID=Lus10009505.BGIv1.0 annot-version=v1.0 ATGGCGATGAACATCAGCCAGGGCTCCTTCCAAACAATCATGGCGGCCAACATGGACCGCCACGTCACCCCACAGCTGCAGATCCCGGCCGGATCCCTTG GAGTCTTCATGATCGTTACATTAGCTTTATGGGTGGTCGTATACGACCGGGTCATAATCCCCATCGGATACAAGATCAGGGGTGAACCGACCCGCCTCAC AATCAAACAGCGAATGGGAATTGGAATCCTCTTCTCCTCCCTAGCCATGGTGGCCCTAGCTGTCGTCGAGTCCTACAGCCGCAGAATCGCGATCGGCGGG GAAAAGATGATGTGGGCGATATGGATGATGCCGCATCTGGTCCTCCTCGGCCTGGCGGAGGGACTGAACGCTACAGCGCAGATCGAGTTCTATTACAACG AGCTTCCAAGGAGCATGAGCAGCATAGCTACGTCACTCTGGGGAATGGCGTTGTCTGGCGCAGGCTTGGCGTCAAGCTTGATTGTGAGCGCCGTCGATGA GGTTACGAAGAAGAAGAAGAACGGAAGGGAAGAGTCAGAGAGCTGGACATCGAGCGATATCAATAAAGGGCATTACGATTACTATTACTGGCTGCTGGCG TCGCTGAGCTTTTGCCAATTTTGTGTATTATTTGGGGTGCTCCAAAGCTTATGGGCCTAG
AA sequence Show only first row Show all	>Lus10009505 pacid=23147327 polypeptide=Lus10009505 locus=Lus10009505.g ID=Lus10009505.BGIv1.0 annot-version=v1.0 MAMNISQGSFQTIMAANMDRHVTPQLQIPAGSLGVFMIVTLALWVVVYDRVIIPIGYKIRGEPTRLTIKQRMGIGILFSSLAMVALAVVESYSRRIAIGG EKMMWAIWMMPHLVLLGLAEGLNATAQIEFYYNELPRSMSSIATSLWGMALSGAGLASSLIVSAVDEVTKKKKNGREESESWTSSDINKGHYDYYYWLLA SLSFCQFCVLFGVLQSLWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10009505 [exp]	0	1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	7.7	0.6729
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	14.6	0.6530
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	16.3	0.6530
AT4G19570			Chaperone DnaJ-domain superfam...		Lus10028524 [exp]	17.5	0.5516
					Lus10011314 [exp]	18.9	0.6465
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	21.7	0.6357
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	23.7	0.6357
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	25.7	0.6357
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	27.4	0.6357
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	29.1	0.6357

Compare expression of checked genes

Lus10009505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.