Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16180 194 / 3e-58 Major facilitator superfamily protein (.1) AT1G52190 192 / 7e-58 Major facilitator superfamily protein (.1) AT5G62680 120 / 4e-31 Major facilitator superfamily protein (.1) AT5G28470 113 / 7e-29 Major facilitator superfamily protein (.1) AT1G27080 112 / 1e-28 NRT1.6 nitrate transporter 1.6 (.1) AT3G47960 108 / 8e-27 Major facilitator superfamily protein (.1) AT1G69860 107 / 8e-27 Major facilitator superfamily protein (.1) AT3G54140 106 / 2e-26 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69870 102 / 5e-25 NRT1.7 nitrate transporter 1.7 (.1) AT2G02040 99 / 1e-23 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 194 / 3e-58 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 179 / 3e-52 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10038616 [exp] 152 / 7e-43 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10038618 [exp] 149 / 2e-41 AT1G52190 377 / 5e-124 Major facilitator superfamily protein (.1) Lus10023663 [exp] 143 / 3e-39 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 142 / 7e-39 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10042182 [exp] 124 / 2e-32 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 122 / 6e-32 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 120 / 3e-31 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041400 [exp] 210 / 1e-64 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 209 / 2e-64 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 207 / 2e-63 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 206 / 4e-63 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 205 / 1e-62 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 201 / 2e-61 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 198 / 6e-60 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 190 / 3e-57 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 176 / 1e-51 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040301 [exp] 166 / 2e-48 AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10009506 pacid=23147319 polypeptide=Lus10009506 locus=Lus10009506.g ID=Lus10009506.BGIv1.0 annot-version=v1.0 ATGATCCCGCAAGCAAGGCCACCACCATGCAGCATAGCTACTAGTTATGACTGCAATAAACAGGCCACCACACCCCAGCTCCTCCTTCTCTACTCTTCCT TCGCCCTAATGTCCATCGGCAGTGGGGGAGTCCGCTCGTCATCCATGGCCTTTGGAGCTGATCAGTTGGTGGGCTTTCCAACCAATAACAAGATGGGCAA CTCCAGAGGAGGAATCCTGGAGAGGTACTTCAGCTGGTACTATACGTTGGTATCAGTATCTGTAATTCTGGCCCTGACTTGCATTGTCGGCATCCAAGAA ACCATGGGTTGGCAAGTCGGATTTGGTGTTCCTATGATTCTCATGATGATTTCGGCTCTTTCCTTCTTCATGGCGTCCTCTTTCTATCTCAATTCCCAAC CAAATTCAAGCCTGCTCACTGGCCTTGCTCAAGTCATTGTTGCTTCCTACTGCAACAGAGTGGATCAACACACTAATAATGCTTTCCATTATCCTATATC CACCACCACTACTCGCCCTGTTCCAACTGACAATTTGAGGTTCTTAAACAAGGCCTGCACAATCAAAAACCCAGAACAAGATCTAACGGCGGAGGGAGAA GCAACAAACCCATGGCGACTCACTGTTAGGAATATGAAGGTTCAAATCAGGAGAGCTGACCGAATAACCAATGAATCAAACCAGTACTGA
AA sequence Show only first row Show all	>Lus10009506 pacid=23147319 polypeptide=Lus10009506 locus=Lus10009506.g ID=Lus10009506.BGIv1.0 annot-version=v1.0 MIPQARPPPCSIATSYDCNKQATTPQLLLLYSSFALMSIGSGGVRSSSMAFGADQLVGFPTNNKMGNSRGGILERYFSWYYTLVSVSVILALTCIVGIQE TMGWQVGFGVPMILMMISALSFFMASSFYLNSQPNSSLLTGLAQVIVASYCNRVDQHTNNAFHYPISTTTTRPVPTDNLRFLNKACTIKNPEQDLTAEGE ATNPWRLTVRNMKVQIRRADRITNESNQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	0	1
					Lus10033149 [exp]	1.0	1.0000
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	1.4	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	1.7	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	2.0	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	2.2	1.0000
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	2.8	1.0000
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	3.2	0.9823
					Lus10026868 [exp]	3.5	0.9548
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	3.5	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	3.7	1.0000

Compare expression of checked genes

Lus10009506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.