Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32785 144 / 7e-44 unknown protein AT5G43870 139 / 2e-38 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 134 / 3e-37 FKD1 FORKED 1 (.1.2) AT4G14740 129 / 9e-36 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 130 / 2e-35 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 103 / 8e-26 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 103 / 9e-26 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 89 / 3e-20 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G32780 47 / 3e-06 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014703 [exp] 133 / 3e-38 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004734 [exp] 126 / 4e-34 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 116 / 4e-31 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 117 / 2e-30 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 98 / 1e-23 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10021903 [exp] 75 / 6e-16 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 57 / 3e-09 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10007797 [exp] 0 / 1 AT4G16670 203 / 1e-62 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042000 [exp] 238 / 1e-76 AT4G32785 159 / 1e-47 unknown protein Potri.010G082400 [exp] 141 / 2e-39 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 137 / 1e-37 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.005G213800 [exp] 131 / 1e-35 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 130 / 4e-35 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.003G077900 [exp] 121 / 2e-32 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 110 / 3e-28 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10009509 pacid=23147320 polypeptide=Lus10009509 locus=Lus10009509.g ID=Lus10009509.BGIv1.0 annot-version=v1.0 ATGTCAGCAGAATTAGCAGCTGCAAAGGGCAACAAGACACTGTCGTCCAAAACACCGGCTGCCATGGCATCTGCAGCAGCCCTTGTAGCATCTCACTGCA TTGAGATAGCAGAGGACATGGGGGCTGAACATGAACAGATCTCTACTGTCATTGACTCGGCAATCAATGTCAAGACAAATGGAGATATCATGACTCTAAC AGCCGGAGCAGCTACAGCACTAAGAGGAGCTGTCACCCTGAGGGCACGGCTGCAGAAAGGGTATGGAGGTCCAGCATTTGCGTTGGCAGAGGACAAGGAT GAAGAAGGCGGTGAATCCAAATTCTCGGCTGCATTGAAATTTGTAACTGAAGGGGACGAACTACTAAAGCGGACAAGGAAAGGAGCTCTACACTGGAAAC AAGTTTCTTTCAGTATAAATGCAAGCTGCCAGGTTGTAGCTAAAATGAAAAGCAAACACATGGCAGGGACATTCACAAAGAAAAAGAAATGTGTAGTTTT TGGATTTCAGAGTGAAATTAGGGCATGGCCAGGGCGAAATACTGATGGCTGTAATGAGCAGAGAGCTTACTTTGGGATTAAAACAGCAGAAAGAACTATT GAGTTCGAATGTAGGAACCAAATGGACAAGCAGATGTGGGTTGAGGGTATAAATCATATGCTTGATTGTCGTGCCAACTTTACATGA
AA sequence Show only first row Show all	>Lus10009509 pacid=23147320 polypeptide=Lus10009509 locus=Lus10009509.g ID=Lus10009509.BGIv1.0 annot-version=v1.0 MSAELAAAKGNKTLSSKTPAAMASAAALVASHCIEIAEDMGAEHEQISTVIDSAINVKTNGDIMTLTAGAATALRGAVTLRARLQKGYGGPAFALAEDKD EEGGESKFSAALKFVTEGDELLKRTRKGALHWKQVSFSINASCQVVAKMKSKHMAGTFTKKKKCVVFGFQSEIRAWPGRNTDGCNEQRAYFGIKTAERTI EFECRNQMDKQMWVEGINHMLDCRANFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	0	1
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	3.7	0.8583
AT3G48970			Heavy metal transport/detoxifi...		Lus10039225 [exp]	4.4	0.8935
AT5G02440			unknown protein		Lus10023770 [exp]	7.1	0.8431
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	7.5	0.8408
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	8.1	0.8878
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	8.8	0.8816
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	8.8	0.8694
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10021113 [exp]	9.9	0.8084
AT4G32780			phosphoinositide binding (.1)		Lus10009508 [exp]	10.0	0.8655
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	12.2	0.8814

Compare expression of checked genes

Lus10009509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.