Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 243 / 7e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 239 / 1e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 232 / 1e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 228 / 7e-69 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 226 / 3e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 209 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 196 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 182 / 2e-52 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 182 / 2e-52 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 166 / 2e-46 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011699 [exp] 804 / 0 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 243 / 3e-75 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 240 / 3e-74 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 231 / 1e-70 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 226 / 5e-69 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 203 / 6e-60 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 201 / 5e-59 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 200 / 3e-58 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 194 / 1e-55 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239600 [exp] 549 / 0 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 249 / 1e-77 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 246 / 3e-76 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 241 / 4e-74 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 241 / 7e-74 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 234 / 9e-72 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G051100 [exp] 226 / 2e-68 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 225 / 2e-67 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 218 / 4e-66 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 211 / 1e-63 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10009510 pacid=23147332 polypeptide=Lus10009510 locus=Lus10009510.g ID=Lus10009510.BGIv1.0 annot-version=v1.0 ATGGCATCCCCTGCTCCGGCCACCGGCCATGAAGTGAACTTTATTAGGTCTCCCCGCTTATCTACGGACAGCAACTACCGCCACCTTGCCACGATGCCGC CGCCGCCGCCAAGCCCAGGATCTCCGTGGTCCTTTTCCCCTCCAAGGGCGAGTCCATCGCCGTCCTTACTTTATTACTGCATAGCCTCCCTCCACCGCCA CGAGGGAAATATCCACACCATCGCCGTCGCCAAAGGCGTGGTGTTCACCGGATCGGAGAGTAGCCGCATCCGCGCGTGGAGACACTCGGACTGCACGGAA CGTGGGTACGTCAAGGCCAGCTGCGGTGAGGTGCGAGCCGTGCTGGCGTACGGAAACGCGCTATTCTCAGCACACAAGGACAACAAGATAAGGATTTGGA ACTTCACCCTCTCCGATACCTTCCGCTTCAAGAAAATCTCCACTTTGCCCCACAAACGCTCCCACAGTTTCCCCTTCCTCAGGAGCAGCAACAGTATGAT TGCACCGCGGCAGCAACAGCACAAGGAGTGCGTATCGCGCATGGCGTACTACCACACAGAGGGACTCCTCTACACAGGGTCCCACGACCGAACAGTGAAG GTGTGGCGAGTCAACGACGACAAGAAGCCGTGCGTTGACTCGTTTCAAGCACACGACGAGAGCATCACCTCCATTATAGTCAACCAGAACGACGGATCCG TGTTCACAGCGTCCTTCGACGGATCCATCAAGATATGGCGACGTGTCTACCGAGAAAACTCACACACACTCACCATGACACTTAGGTTCCAACAATCCCC AGTCAACGCCCTGGCGTTGACCATGACCAGCTCACTCTCCCCCTCATCCGGCTCCGGCTGCTGCTTTCTGTACTCGGGTGCCTCGGACGGGACCATCAAC TTCTGGGAGAAGGAGAAGTTCTCCGGGAGGTTTAACCATGGTGGGTTCTTGCAAGGCCACCGTTTCGCGGTGCTGTGCTTGGCGGCGGTAGAGGAGGCGA AGTTGGTGTTCAGTGGGTCGGAGGACACAACCATTAGGGTTTGGAGGAGGGAAGGCGGTAGCGGGGGATTCCATGAGTGTTTGGCTGTTTTGGATGGGCA TAGAGGTCCCGTTAAGTGTTTGGCGGTTAGTTTGGAGATGGAGAAAGTTGGGAATGCGTTTTTGGTGTATAGTGCTGGTTTGGATCAGAGTTTCAAGGTG TGGAGGGTTAAGTTTTTGATGGAGGATCAGGAGGAGGAGGAGGAAGGATCAGGCAGCGGGGATTGTAATAAGGAAGAAATTATCACTGGAATCAGGAGGA GTATTAGCACTAATAATCTTGATCCGATTTCGACTGGTAGTATTCATAATAAGGTGTTGGAGTACGAGACCAGTCCTGTTCTGTCTCCTTCCTGGGTTGA GAAGAAGCTCAGACAAGATAAATTTTTGTAG
AA sequence Show only first row Show all	>Lus10009510 pacid=23147332 polypeptide=Lus10009510 locus=Lus10009510.g ID=Lus10009510.BGIv1.0 annot-version=v1.0 MASPAPATGHEVNFIRSPRLSTDSNYRHLATMPPPPPSPGSPWSFSPPRASPSPSLLYYCIASLHRHEGNIHTIAVAKGVVFTGSESSRIRAWRHSDCTE RGYVKASCGEVRAVLAYGNALFSAHKDNKIRIWNFTLSDTFRFKKISTLPHKRSHSFPFLRSSNSMIAPRQQQHKECVSRMAYYHTEGLLYTGSHDRTVK VWRVNDDKKPCVDSFQAHDESITSIIVNQNDGSVFTASFDGSIKIWRRVYRENSHTLTMTLRFQQSPVNALALTMTSSLSPSSGSGCCFLYSGASDGTIN FWEKEKFSGRFNHGGFLQGHRFAVLCLAAVEEAKLVFSGSEDTTIRVWRREGGSGGFHECLAVLDGHRGPVKCLAVSLEMEKVGNAFLVYSAGLDQSFKV WRVKFLMEDQEEEEEGSGSGDCNKEEIITGIRRSISTNNLDPISTGSIHNKVLEYETSPVLSPSWVEKKLRQDKFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50390			Transducin/WD40 repeat-like su...		Lus10009510 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	16.2	0.6717
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	19.9	0.6637
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	30.2	0.6596
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	32.7	0.6595
AT3G57570			ARM repeat superfamily protein...		Lus10026304 [exp]	38.1	0.6026
AT3G44380			Late embryogenesis abundant (L...		Lus10020628 [exp]	44.2	0.6263
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	50.7	0.6572
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	66.2	0.6263
AT4G16050			Aminotransferase-like, plant m...		Lus10043051 [exp]	117.0	0.5748
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	170.6	0.5755

Compare expression of checked genes

Lus10009510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.